[HTML][HTML] A 19-isolate reference-quality global pangenome for the fungal wheat pathogen Zymoseptoria tritici

T Badet, U Oggenfuss, L Abraham, BA McDonald… - BMC biology, 2020 - Springer
… Here, we establish a reference-quality pangenome of a … Zymoseptoria tritici causes substantial
worldwide losses to … each genome to construct a global pangenome. Major chromosomal …

[HTML][HTML] Pangenome analyses of the wheat pathogen Zymoseptoria tritici reveal the structural basis of a highly plastic eukaryotic genome

C Plissonneau, FE Hartmann, D Croll - BMC biology, 2018 - Springer
… We expanded our analyses of the pangenome to a worldwide collection of 123 isolates
of the same species. We confirmed that accessory genes were indeed more likely to show …

A global pangenome for the wheat fungal pathogen Pyrenophora tritici-repentis and prediction of effector protein structural homology

PM Moolhuijzen, PT See, G Shi… - Microbial …, 2022 - microbiologyresearch.org
… ) and Zymoseptoria tritici (Zt, cause of Septoria tritici blotch) are … is then referred to as the
pangenome, which is larger than … presented here for a pangenome analysis to determine whole …

[HTML][HTML] The expression landscape and pangenome of long non-coding RNA in the fungal wheat pathogen Zymoseptoria tritici

HM Glad, SM Tralamazza, D Croll - Microbial Genomics, 2023 - microbiologyresearch.org
… in Zymoseptoria tritici, an important global pathogen of wheat impacting global food …
Finally, we assess pangenome features of lncRNAs using four additional reference-quality …

[HTML][HTML] A pangenome-guided manually curated library of transposable elements for Zymoseptoria tritici

T Baril, D Croll - BMC Research Notes, 2023 - Springer
… pathogen Zymoseptoria tritici, we produced a manually curated TE library. This was generated
by detecting TEs in 19 reference genome assemblies representing the global diversity of …

[HTML][HTML] A thousand-genome panel retraces the global spread and adaptation of a major fungal crop pathogen

A Feurtey, C Lorrain, MC McDonald, A Milgate… - Nature …, 2023 - nature.com
… assembling a global thousand-genome panel of Zymoseptoria tritici, a major fungal pathogen
of wheat reported in all production areas worldwide. We identify the global invasion routes …

[HTML][HTML] The pangenome of the wheat pathogen Pyrenophora tritici-repentis reveals novel transposons associated with necrotrophic effectors ToxA and ToxB

R Gourlie, M McDonald, M Hafez, R Ortega-Polo… - BMC biology, 2022 - Springer
… In this study, we performed a global pangenome analysis of Ptr, an important foliar pathogen
… Previously, a worldwide collection of Ptr isolates, some of which were included in this study, …

[HTML][HTML] Combined pangenomics and transcriptomics reveals core and redundant virulence processes in a rapidly evolving fungal plant pathogen

H Chen, R King, D Smith, C Bayon, T Ashfield… - BMC biology, 2023 - Springer
… fungus Zymoseptoria tritici represents one of the most rapidly evolving threats to global food
… pathogen of wheat, Zymoseptoria tritici, is the causal agent of Septoria tritici blotch (STB), a …

Pan-genome survey of Septoria pistaciarum, causal agent of Septoria leaf spot of pistachios, across three Aegean sub-regions of Greece

A Zambounis, A Boutsika, N Gray, M Hossain… - Frontiers in …, 2024 - frontiersin.org
… in the cultivation, worldwide. This study describes the first pan-genome-based survey of this
… of the closelyrelated wheat pathogen Zymoseptoria tritici. A single orthogroup present in all …

[HTML][HTML] Genome compartmentalization predates species divergence in the plant pathogen genus Zymoseptoria

A Feurtey, C Lorrain, D Croll, C Eschenbrenner… - BMC genomics, 2020 - Springer
… The wheat pathogen Zymoseptoria tritici with its highly variable genome, has emerged as
a … to different specificity levels in the Zymoseptoria pangenome. The boxplots represent the …