[HTML][HTML] A 19-isolate reference-quality global pangenome for the fungal wheat pathogen Zymoseptoria tritici
… Here, we establish a reference-quality pangenome of a … Zymoseptoria tritici causes substantial
worldwide losses to … each genome to construct a global pangenome. Major chromosomal …
worldwide losses to … each genome to construct a global pangenome. Major chromosomal …
[HTML][HTML] Pangenome analyses of the wheat pathogen Zymoseptoria tritici reveal the structural basis of a highly plastic eukaryotic genome
C Plissonneau, FE Hartmann, D Croll - BMC biology, 2018 - Springer
… We expanded our analyses of the pangenome to a worldwide collection of 123 isolates
of the same species. We confirmed that accessory genes were indeed more likely to show …
of the same species. We confirmed that accessory genes were indeed more likely to show …
A global pangenome for the wheat fungal pathogen Pyrenophora tritici-repentis and prediction of effector protein structural homology
PM Moolhuijzen, PT See, G Shi… - Microbial …, 2022 - microbiologyresearch.org
… ) and Zymoseptoria tritici (Zt, cause of Septoria tritici blotch) are … is then referred to as the
pangenome, which is larger than … presented here for a pangenome analysis to determine whole …
pangenome, which is larger than … presented here for a pangenome analysis to determine whole …
[HTML][HTML] The expression landscape and pangenome of long non-coding RNA in the fungal wheat pathogen Zymoseptoria tritici
HM Glad, SM Tralamazza, D Croll - Microbial Genomics, 2023 - microbiologyresearch.org
… in Zymoseptoria tritici, an important global pathogen of wheat impacting global food …
Finally, we assess pangenome features of lncRNAs using four additional reference-quality …
Finally, we assess pangenome features of lncRNAs using four additional reference-quality …
[HTML][HTML] A pangenome-guided manually curated library of transposable elements for Zymoseptoria tritici
… pathogen Zymoseptoria tritici, we produced a manually curated TE library. This was generated
by detecting TEs in 19 reference genome assemblies representing the global diversity of …
by detecting TEs in 19 reference genome assemblies representing the global diversity of …
[HTML][HTML] A thousand-genome panel retraces the global spread and adaptation of a major fungal crop pathogen
… assembling a global thousand-genome panel of Zymoseptoria tritici, a major fungal pathogen
of wheat reported in all production areas worldwide. We identify the global invasion routes …
of wheat reported in all production areas worldwide. We identify the global invasion routes …
[HTML][HTML] The pangenome of the wheat pathogen Pyrenophora tritici-repentis reveals novel transposons associated with necrotrophic effectors ToxA and ToxB
… In this study, we performed a global pangenome analysis of Ptr, an important foliar pathogen
… Previously, a worldwide collection of Ptr isolates, some of which were included in this study, …
… Previously, a worldwide collection of Ptr isolates, some of which were included in this study, …
[HTML][HTML] Combined pangenomics and transcriptomics reveals core and redundant virulence processes in a rapidly evolving fungal plant pathogen
H Chen, R King, D Smith, C Bayon, T Ashfield… - BMC biology, 2023 - Springer
… fungus Zymoseptoria tritici represents one of the most rapidly evolving threats to global food
… pathogen of wheat, Zymoseptoria tritici, is the causal agent of Septoria tritici blotch (STB), a …
… pathogen of wheat, Zymoseptoria tritici, is the causal agent of Septoria tritici blotch (STB), a …
Pan-genome survey of Septoria pistaciarum, causal agent of Septoria leaf spot of pistachios, across three Aegean sub-regions of Greece
A Zambounis, A Boutsika, N Gray, M Hossain… - Frontiers in …, 2024 - frontiersin.org
… in the cultivation, worldwide. This study describes the first pan-genome-based survey of this
… of the closelyrelated wheat pathogen Zymoseptoria tritici. A single orthogroup present in all …
… of the closelyrelated wheat pathogen Zymoseptoria tritici. A single orthogroup present in all …
[HTML][HTML] Genome compartmentalization predates species divergence in the plant pathogen genus Zymoseptoria
… The wheat pathogen Zymoseptoria tritici with its highly variable genome, has emerged as
a … to different specificity levels in the Zymoseptoria pangenome. The boxplots represent the …
a … to different specificity levels in the Zymoseptoria pangenome. The boxplots represent the …
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