DDR: efficient computational method to predict drugtarget interactions using graph mining and machine learning approaches

RS Olayan, H Ashoor, VB Bajic - Bioinformatics, 2018 - academic.oup.com
… DDR, which utilizes a heterogeneous drugtarget graph that contains information about
various similarities between drugs and similarities between proteins as drug targets. On different …

DTiGEMS+: drugtarget interaction prediction using graph embedding, graph mining, and similarity-based techniques

MA Thafar, RS Olayan, H Ashoor, S Albaradei… - Journal of …, 2020 - Springer
… , as current methods that predict potential drugtarget interactions suffer from high false-…
method that predicts DrugTarget interactions using Graph Embedding, graph Mining, and …

Computational drug-target interaction prediction based on graph embedding and graph mining

MA Thafar, S Albaradie, RS Olayan, H Ashoor… - Proceedings of the …, 2020 - dl.acm.org
… method DTiGEM (DrugTarget interaction prediction using Graph Embedding and graph
Mining) for … It uses graph embedding, graph-mining, and ML. We evaluate the performance by …

Affinity2Vec: drug-target binding affinity prediction through representation learning, graph mining, and machine learning

MA Thafar, M Alshahrani, S Albaradei, T Gojobori… - Scientific reports, 2022 - nature.com
… the target-target similarity and drug-drug similarity graphs, we applied a preprocessing step
by filtering each graph … connecting similar target proteins or similar drugs, the graph will be a …

[PDF][PDF] Graph mining: An overview

C Borgelt - Proc. 19th GMA/GI Workshop Computational …, 2009 - d-nb.info
drugs (like Aspirin). As a consequence the chances for the development of drugs for target
groups … reduced, since the expected revenue from such drugs is low. In order to improve this …

A novel graph mining approach to predict and evaluate food-drug interactions

MM Rahman, SM Vadrev, A Magana-Mora, J Levman… - Scientific reports, 2022 - nature.com
… , and known drug-protein interactions. A random forest model was trained on extracted …
of the graph built from known DTIs and multiple similarities among the drug-drug and target-target

Drug target inference by mining transcriptional data using a novel graph convolutional network framework

F Zhong, X Wu, R Yang, X Li, D Wang, Z Fu, X Liu… - Protein & …, 2022 - academic.oup.com
… To capture the drug-target interactions and thus identify drug targets, we propose a
SSGCN model that learns the undiscovered correlations between CP-signatures and the …

Trends in chemical graph data mining

N Wale, X Ning, G Karypis - Managing and mining graph data, 2010 - Springer
graph mining is usually employed at the early stages of drug discovery, it has the potential to
speed up the entire drug discov… Graph mining has also been utilized to study the drug-target

Novel computational methods to predict drugtarget interactions using graph mining and machine learning approaches

RS Olayan - 2017 - repository.kaust.edu.sa
… a heterogeneous drug-target graph that … drugs and multiple similarities between target
proteins. Both of the methods developed and presented in this study utilize data and graph mining

Graph neural network approaches for drug-target interactions

Z Zhang, L Chen, F Zhong, D Wang, J Jiang… - Current Opinion in …, 2022 - Elsevier
drugdrug and protein–protein similarities to the drug-target bipartite graph to construct the
semi-bipartite graph … geometric distances in drug target nodes and drugdrug and protein–…