Population genomics of transposable element activation in the highly repressive genome of an agricultural pathogen

D Pereira, U Oggenfuss, BA McDonald… - Microbial …, 2021 - microbiologyresearch.org
The activity of transposable elements (TEs) can be an … nodorum, a fungal pathogen of wheat
with efficient RIP. A global … Miniature inverted-repeat transposable elements (MITEs) and …

A devil's bargain with transposable elements in plant pathogens

S Fouché, U Oggenfuss, E Chanclud, D Croll - Trends in Genetics, 2022 - cell.com
… Fusarium oxysporum shows even stronger links between TEs and effectors than most
other plant pathogens. Non-autonomous miniature inverted repeat transposable elements (MITEs) …

A population-level invasion by transposable elements triggers genome expansion in a fungal pathogen

U Oggenfuss, T Badet, T Wicker, FE Hartmann… - Elife, 2021 - elifesciences.org
… is driven by the activity of transposable elements (TEs). The … tritici, a major fungal wheat
pathogen. We built a robust map of … genome-wide expansion from the pathogen’s center of origin …

A population-level invasion by transposable elements in a fungal pathogen

U Oggenfuss, T Badet, T Wicker, FE Hartmann… - BioRxiv, 2020 - biorxiv.org
… is driven by the activity of transposable elements (TEs). The … tritici, a major fungal wheat
pathogen. We built a robust map of … genome-wide expansion from the pathogen’s center of origin …

… Genomics of Four Fungal Grass Pathogens in the Genus Zymoseptoria Identify Novel Orphan Genes and Species-Specific Invasions of Transposable Elements

J Grandaubert, A Bhattacharyya… - G3: Genes, Genomes …, 2015 - academic.oup.com
… De novo repeat identification allowed us to show that few families of transposable elements
… of fungal plant pathogens. gene annotation, transposable elements, comparative genomics, …

Host specialization of the blast fungus Magnaporthe oryzae is associated with dynamic gain and loss of genes linked to transposable elements

K Yoshida, DGO Saunders, C Mitsuoka, S Natsume… - BMC genomics, 2016 - Springer
… grisea, that infects the wild grass Digitaria … pathogens than the genes distantly located to
TEs (C2 and C3). From these results, we conclude that presence of transposable elements may …

Dynamics of transposable elements in recently diverged fungal pathogens: lineage-specific transposable element content and efficiency of genome defenses

C Lorrain, A Feurtey, M Möller, J Haueisen… - G3, 2021 - academic.oup.com
… We investigated how past and present transposition events have shaped genome evolution
of a major wheat pathogen and its wild-grass infecting sister-species. Within the genus …

Signatures of host specialization and a recent transposable element burst in the dynamic one-speed genome of the fungal barley powdery mildew pathogen

L Frantzeskakis, B Kracher, S Kusch… - BMC genomics, 2018 - Springer
… -pathogenic Ascomycetes, strongly enriched with an unusually high content of transposable
elements … graminis life history and co-evolutionary patterns of the fungal pathogen with grass

Stress-driven transposable element de-repression dynamics and virulence evolution in a fungal pathogen

S Fouché, T Badet, U Oggenfuss… - Molecular biology …, 2020 - academic.oup.com
Transposable elements (TEs) are drivers of genome … pathogens are excellent models to
dissect the impact of stress on TEs. The process of plant infection induces stress for the pathogen

Population-level transposable element expression dynamics influence trait evolution in a fungal crop pathogen

LN Abraham, U Oggenfuss, D Croll - Mbio, 2024 - Am Soc Microbiol
… of transposable elements (TEs) using deep population genomics and transcriptomics analyses
of a fungal plant pathogen with a … and can broadly underpin trait variation in pathogens. …