Grid inhomogeneous solvation theory: hydration structure and thermodynamics of the miniature receptor cucurbit [7] uril
CN Nguyen, T Kurtzman Young… - The Journal of chemical …, 2012 - pubs.aip.org
… issue by introducing grid inhomogeneous solvation theory (GIST), which discretizes the
equations of inhomogeneous solvation theory (IST) onto a three-dimensional grid situated in the …
equations of inhomogeneous solvation theory (IST) onto a three-dimensional grid situated in the …
[HTML][HTML] Grid inhomogeneous solvation theory for cross-solvation in rigid solvents
… Grid Inhomogeneous Solvation Theory (GIST) has proven … already present in the
inhomogeneous solvation theory. Here, … of ten different solvent molecules solvated within each …
inhomogeneous solvation theory. Here, … of ten different solvent molecules solvated within each …
Testing inhomogeneous solvation theory in structure-based ligand discovery
… Receptor desolvation in the CcP-gateless cavity using grid-based inhomogeneous solvation
theory. (A) Upon ligand binding, ordered water can be displaced, remain unaffected, or …
theory. (A) Upon ligand binding, ordered water can be displaced, remain unaffected, or …
Structure and thermodynamics of molecular hydration via grid inhomogeneous solvation theory
… Grid Inhomogeneous Solvation Theory (GIST), which discretizes the equations of Inhomogeneous
Solvation Theory on a 3D grid in a … Here, the solvent volume is divided into small grid …
Solvation Theory on a 3D grid in a … Here, the solvent volume is divided into small grid …
Explicit solvation thermodynamics in ionic solution: extending grid inhomogeneous solvation theory to solvation free energy of salt–water mixtures
… solvation properties involving more than one solvent species. Here, we present an extension
to grid inhomogeneous solvation theory (… , we compute the solvation energy as well as first …
to grid inhomogeneous solvation theory (… , we compute the solvation energy as well as first …
Thermodynamic properties of water molecules in the presence of cosolute depend on DNA structure: a study using grid inhomogeneous solvation theory
… grid inhomogeneous solvation theory (GIST) with or without cosolutes. Our analysis indicated
that (i) cosolutes increased the free energy of water molecules around DNA by disrupting …
that (i) cosolutes increased the free energy of water molecules around DNA by disrupting …
Solvation thermodynamics in different solvents: water–chloroform partition coefficients from grid inhomogeneous solvation theory
… over grid inhomogeneous solvation theory (GIST) is its lower calculation cost. The theoretical
… The fundamental assumptions within the theory of inhomogeneous solvation theory (IST)-…
… The fundamental assumptions within the theory of inhomogeneous solvation theory (IST)-…
Local thermodynamics of the water molecules around single-and double-stranded DNA studied by grid inhomogeneous solvation theory
… grid inhomogeneous solvation theory. Free energies of water molecules solvating the
minor groove of dsDNAs are lower than those near ssDNAs, while water molecules should be …
minor groove of dsDNAs are lower than those near ssDNAs, while water molecules should be …
MPI‐parallelization of the grid inhomogeneous solvation theory calculation
… The grid inhomogeneous solvation theory (GIST) method requires the often time‐consuming
calculation of water–water and water‐solute energy on a grid. Previous efforts to speed up …
calculation of water–water and water‐solute energy on a grid. Previous efforts to speed up …
… decomposition of solvation free energies with particle mesh Ewald and long-range Lennard-Jones interactions in Grid Inhomogeneous Solvation Theory
Grid Inhomogeneous Solvation Theory (GIST) maps out solvation thermodynamic properties
on a fine meshed grid and provides a statistical mechanical formalism for thermodynamic …
on a fine meshed grid and provides a statistical mechanical formalism for thermodynamic …
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