Grid inhomogeneous solvation theory: hydration structure and thermodynamics of the miniature receptor cucurbit [7] uril

CN Nguyen, T Kurtzman Young… - The Journal of chemical …, 2012 - pubs.aip.org
… issue by introducing grid inhomogeneous solvation theory (GIST), which discretizes the
equations of inhomogeneous solvation theory (IST) onto a three-dimensional grid situated in the …

[HTML][HTML] Grid inhomogeneous solvation theory for cross-solvation in rigid solvents

F Waibl, J Kraml, VJ Hoerschinger, F Hofer… - The Journal of …, 2022 - pubs.aip.org
Grid Inhomogeneous Solvation Theory (GIST) has proven … already present in the
inhomogeneous solvation theory. Here, … of ten different solvent molecules solvated within each …

Testing inhomogeneous solvation theory in structure-based ligand discovery

TE Balius, M Fischer, RM Stein… - Proceedings of the …, 2017 - National Acad Sciences
… Receptor desolvation in the CcP-gateless cavity using grid-based inhomogeneous solvation
theory. (A) Upon ligand binding, ordered water can be displaced, remain unaffected, or …

Structure and thermodynamics of molecular hydration via grid inhomogeneous solvation theory

C Nguyen, MK Gilson, T Young - arXiv preprint arXiv:1108.4876, 2011 - arxiv.org
Grid Inhomogeneous Solvation Theory (GIST), which discretizes the equations of Inhomogeneous
Solvation Theory on a 3D grid in a … Here, the solvent volume is divided into small grid

Explicit solvation thermodynamics in ionic solution: extending grid inhomogeneous solvation theory to solvation free energy of salt–water mixtures

F Waibl, J Kraml, ML Fernández-Quintero… - Journal of Computer …, 2022 - Springer
solvation properties involving more than one solvent species. Here, we present an extension
to grid inhomogeneous solvation theory (… , we compute the solvation energy as well as first …

Thermodynamic properties of water molecules in the presence of cosolute depend on DNA structure: a study using grid inhomogeneous solvation theory

M Nakano, H Tateishi-Karimata, S Tanaka… - Nucleic Acids …, 2015 - academic.oup.com
grid inhomogeneous solvation theory (GIST) with or without cosolutes. Our analysis indicated
that (i) cosolutes increased the free energy of water molecules around DNA by disrupting …

Solvation thermodynamics in different solvents: water–chloroform partition coefficients from grid inhomogeneous solvation theory

J Kraml, F Hofer, AS Kamenik, F Waibl… - Journal of Chemical …, 2020 - ACS Publications
… over grid inhomogeneous solvation theory (GIST) is its lower calculation cost. The theoretical
… The fundamental assumptions within the theory of inhomogeneous solvation theory (IST)-…

Local thermodynamics of the water molecules around single-and double-stranded DNA studied by grid inhomogeneous solvation theory

M Nakano, H Tateishi-Karimata, S Tanaka… - Chemical Physics …, 2016 - Elsevier
grid inhomogeneous solvation theory. Free energies of water molecules solvating the
minor groove of dsDNAs are lower than those near ssDNAs, while water molecules should be …

MPI‐parallelization of the grid inhomogeneous solvation theory calculation

DR Roe, BR Brooks - Journal of Computational Chemistry, 2024 - Wiley Online Library
… The grid inhomogeneous solvation theory (GIST) method requires the often time‐consuming
calculation of water–water and water‐solute energy on a grid. Previous efforts to speed up …

… decomposition of solvation free energies with particle mesh Ewald and long-range Lennard-Jones interactions in Grid Inhomogeneous Solvation Theory

L Chen, A Cruz, DR Roe, AC Simmonett… - … of chemical theory …, 2021 - ACS Publications
Grid Inhomogeneous Solvation Theory (GIST) maps out solvation thermodynamic properties
on a fine meshed grid and provides a statistical mechanical formalism for thermodynamic …