Growth phase‐dependent expression of the Pseudomonas putida KT2440 transcriptional machinery analysed with a genome‐wide DNA microarray

L Yuste, AB Hervás, I Canosa, R Tobes… - Environmental …, 2006 - Wiley Online Library
microarray developed is described in detail in Experimental procedures. We used the
microarray for analysing the entry into stationary phase of … These growth conditions were chosen …

Global analysis of growth phase responsive gene expression and regulation of antibiotic biosynthetic pathways in Streptomyces coelicolor using DNA microarrays

J Huang, CJ Lih, KH Pan, SN Cohen - Genes & development, 2001 - genesdev.cshlp.org
… proceeds through a complex growth cycle in which morphological … We used DNA
microarrays and mutational analysis to … Microarray analysis of RNA from cells mutated in genes …

Lessons from DNA microarray analysis: the gene expression profile of biofilms

BA Lazazzera - Current Opinion in Microbiology, 2005 - Elsevier
… These DNA microarray studies have also told us that we may miss biofilm-required genes
if we compare biofilm cells to planktonic cells from one growth condition. These studies also …

Expression deconvolution: a reinterpretation of DNA microarray data reveals dynamic changes in cell populations

P Lu, A Nakorchevskiy… - Proceedings of the …, 2003 - National Acad Sciences
… The haploid yeast were grown in yeast extract/peptone/dextrose (YPD) media and harvested
in exponential growth phase (OD ≈ 0.5-0.8), then assayed for DNA content by staining with …

Applications of DNA microarrays in microbial systems

WY Rick, T Wang, L Bedzyk, KM Croker - Journal of microbiological …, 2001 - Elsevier
… (i) Regulatory circuitry and coordination of gene expression among different pathways under
different growth conditions can be measured by DNA microarray. (ii) The physiological state …

Applications of DNA microarrays in biology

RB Stoughton - Annu. Rev. Biochem., 2005 - annualreviews.org
… The results of keyword searches for 1990 through 2003 show the growth in PubMed
publications significantly involving DNA microarrays (Figure 1). The catchy concept of “DNA chips” …

Genome-directed primers for selective labeling of bacterial transcripts for DNA microarray analysis

AM Talaat, P Hunter, SA Johnston - Nature Biotechnology, 2000 - nature.com
… However, DNA microarrays require substantial amounts of … gene expression profiling using
DNA microarrays. Both types of … to early log or stationary growth phases. This approach could …

[HTML][HTML] Comparative analysis of growth-phase-dependent gene expression in virulent and avirulent Streptococcus pneumoniae using a high-density DNA microarray

KS Ko, S Park, WS Oh, JY Suh, TJ Oh, S Ahn, J Chun… - Molecules and cells, 2006 - Elsevier
… The growth of the two strains at four time points (2.5, 3.5, 4.5, and 5.5 h) in log phase and
three (6.0, 6.5, and 8.0 h) in stationary phase was very similar. The S. pneumoniae microarrays

DNA microarrays: experimental issues, data analysis, and application to bacterial systems

Y Dharmadi, R Gonzalez - Biotechnology progress, 2004 - Wiley Online Library
… cultures in an exponential growth phase (in batch cultures) … ), which typically alters cell growth.
In most cases the experimental … levels linked to changes in cell growth. One can solve this …

Differential analysis of DNA microarray gene expression data

GW Hatfield, S Hung, P Baldi - Molecular microbiology, 2003 - Wiley Online Library
… In our experience, the largest source of error in the analysis of DNA microarray data comes
… gradients), growth phase differences between cells in the culture, phase variations, periods …