Analysis of copy number variations among diverse cattle breeds

GE Liu, Y Hou, B Zhu, MF Cardone, L Jiang… - Genome …, 2010 - genome.cshlp.org
… ranging from 1 kilobase (kb) to 5 megabase (Mb) comprised mainly of copy number
variation (CNV in the form of large-scale insertions and deletions), as well as inversions and …

Genome-wide detection of human copy number variations using high-density DNA oligonucleotide arrays

D Komura, F Shen, S Ishikawa, KR Fitch… - Genome …, 2006 - genome.cshlp.org
… a large set of reference samples. GIM, which has been used previously for identification of
copy number changes … Subsequent to GIM, SW-ARRAY identifies copy number changes using …

Copy number variations and cognitive phenotypes in unselected populations

K Männik, R Mägi, A Macé, B Cole, AL Guyatt… - Jama, 2015 - jamanetwork.com
… of women reaching the highest educational levelslevels 5 through 7. Only 12 women (12.9%)
in the 250 kb ≤ deletion <500 kb group attained these highest educational levels (OR, …

Recurrent copy number variations in human induced pluripotent stem cells

K Martins-Taylor, BS Nisler, SM Taapken… - Nature …, 2011 - nature.com
… We did not observe a high incidence of trisomy 12, as … used high-resolution aCGH to identify
smaller regions of variation. We analyzed 25 of the hiPSC lines at varying passage numbers

Mutational and selective effects on copy-number variants in the human genome

GM Cooper, DA Nickerson, EE Eichler - Nature genetics, 2007 - nature.com
… In this perspective, we focus our analysis on the large (>1 kb) variants identified in recent
genome-wide surveys. Although still incomplete, the available data allow us to assess the …

[HTML][HTML] Copy number variation in bipolar disorder

EK Green, E Rees, JTR Walters, KG Smith, L Forty… - Molecular …, 2016 - nature.com
… CNV burden analyses have shown an increased burden of large, rare CNVs in SZ: we
reported a 2.5% higher rate of CNVs larger than 500 kb in SZ compared with controls. Using the …

Gene copy number variation and common human disease

M Fanciulli, E Petretto, TJ Aitman - Clinical genetics, 2010 - Wiley Online Library
… In the context of autoimmune disease, it is also of interest that high copy number at CCL3L1
has … Similarly, both high and low beta-defensin copy numbers have been associated with …

Recurrent DNA copy number variation in the laboratory mouse

CM Egan, S Sridhar, M Wigler, IM Hall - Nature genetics, 2007 - nature.com
… Different species, populations and individuals vary considerably in the copy number of …
of spontaneous copy number variation (CNV) in the laboratory mouse. We used high-resolution …

[HTML][HTML] Copy number variations and cancer

A Shlien, D Malkin - Genome medicine, 2009 - Springer
… DNA copy number variations (CNVs) are an important component of genetic variation, … The
advent of high-resolution SNP arrays has made it possible to identify CNVs. Characterization …

cn. MOPS: mixture of Poissons for discovering copy number variations in next-generation sequencing data with a low false discovery rate

G Klambauer, K Schwarzbauer, A Mayr… - Nucleic acids …, 2012 - academic.oup.com
… analysis by NGS has the following potential advantages compared with array-based
techniques: (i) estimation of integer copy numbers from NGS data is more accurate for large