[HTML][HTML] Genome-wide analysis of histone methylation reveals chromatin state-based regulation of gene transcription and function of memory CD8+ T cells

Y Araki, Z Wang, C Zang, WH Wood, D Schones, K Cui… - Immunity, 2009 - cell.com
… of different histone modifications. Our findings reveal a complex regulation by histone
methylation in differential gene expression and suggest that histone methylation may be …

Chromatin states of developmentally-regulated genes revealed by DNA and histone methylation patterns in zebrafish embryos.

LC Lindeman, CL Winata, H Aanes… - International …, 2010 - search.ebscohost.com
… and histones. Little is known about epigenetic states in the developing zebrafish, despite its
importance as a model organism. We report here DNA methylation and histone modification …

Maintenance of chromatin states: an open-and-shut case

D Vermaak, K Ahmad, S Henikoff - Current opinion in cell biology, 2003 - Elsevier
… open chromatin state facilitates rapid DNA methylation by … transcription serve to target
histone methylation and CMT3 to … require histone methylation for maintenance of the silent state

Chromatin remodeling, histone modifications, and DNA methylation—how does it all fit together?

TM Geiman, KD Robertson - Journal of cellular biochemistry, 2002 - Wiley Online Library
… of histone methylation in the establishment of a repressive chromatin state with DNA methylation
… a model in which DNA methylation, histone methylation and deacetylation, as well as …

[HTML][HTML] Learning the formation mechanism of domain-level chromatin states with epigenomics data

WJ Xie, B Zhang - Biophysical Journal, 2019 - cell.com
… We propose an information-theoretic model to identify domain-level chromatin states with
distinct histone modification patterns and infer the mechanism for their formation from …

Integrative epigenomic mapping defines four main chromatin states in Arabidopsis

F Roudier, I Ahmed, C Bérard, A Sarazin… - The EMBO …, 2011 - embopress.org
… Using an integrative analysis of the distribution of 12 chromatin marks, we show that the
Arabidopsis epigenome is organized around four predominant chromatin states with distinct …

Chromatin state maps: new technologies, new insights

EM Mendenhall, BE Bernstein - Current opinion in genetics & development, 2008 - Elsevier
… characterization of mammalian chromatin thanks to advances in chromatin assays, antibody
development, and genomics. Genome-wide maps of chromatin state can now be readily …

[HTML][HTML] Partitioning and plasticity of repressive histone methylation states in mammalian chromatin

AHFM Peters, S Kubicek, K Mechtler, RJ O'Sullivan… - Molecular cell, 2003 - cell.com
… Each methylatable lysine residue can exist in a mono-, di-, or trimethylated state, … methylation
states for histone H3 lysine 9 (H3-K9) and lysine 27 (H3-K27) in mammalian chromatin. …

[HTML][HTML] Histone variants shape chromatin states in Arabidopsis

B Jamge, ZJ Lorković, E Axelsson, A Osakabe… - Elife, 2023 - elifesciences.org
… of histone modifications. To study … chromatin states we determined the role of the chromatin
remodeler DECREASED IN DNA METHYLATION (DDM1) in the organization of chromatin

PCSD: a plant chromatin state database

Y Liu, T Tian, K Zhang, Q You, H Yan… - Nucleic Acids …, 2018 - academic.oup.com
… marks for chromatin state comparison and custom … chromatin states with epigenetic features
and may be beneficial for communities to discover causal functions hidden in plant chromatin