[HTML][HTML] Overview of methods for characterization and visualization of a protein–protein interaction network in a multi-omics integration context
V Robin, A Bodein, MP Scott-Boyer… - Frontiers in Molecular …, 2022 - frontiersin.org
… on the integration of PPI networks can be imagined. The visualization of multilayer multi-omics …
mechanisms of multi-omics integration. A consensus network is the result of the horizontal …
mechanisms of multi-omics integration. A consensus network is the result of the horizontal …
An overview of multiomics: a powerful tool applied in cancer molecular subtyping for cancer therapy
Y Zou, Z Zhao, Y Song - Malignancy Spectrum, 2024 - Wiley Online Library
… HPV integration in cervical cancer identifies clustered genomic hot spots and a potential
microhomology‐mediated integration … biology approaches in multi‐omics data analysis of cancer…
microhomology‐mediated integration … biology approaches in multi‐omics data analysis of cancer…
[HTML][HTML] Network-based drug repurposing for HPV-associated cervical cancer
F Ahmed, YJ Yang, A Samantasinghar, YW Kim… - Computational and …, 2023 - Elsevier
… This analysis identified 142 potential anti-HPV repurposable drugs to target HPV induced
CC … following the CC disease signatures determined by multi-omics data (Figure 1BC). The …
CC … following the CC disease signatures determined by multi-omics data (Figure 1BC). The …
[HTML][HTML] Multi-omics analysis of immune-related microbiome and prognostic model in head and neck squamous cell carcinoma
Y Liu, H Lin, W Zhong, Y Zeng, G Zhou, Z Chen… - Clinical Oral …, 2024 - Springer
… characteristics of head and neck cancer’s immune phenotypes using a multi-omics approach.
… under ICI-3, which is characterized by the best prognosis, are HPV positive (Table 1). …
… under ICI-3, which is characterized by the best prognosis, are HPV positive (Table 1). …
[HTML][HTML] Development and validation of radiomic signatures of head and neck squamous cell carcinoma molecular features and subtypes
… radiomic analysis of pretreatment CT images and multi-omics profiles, and show that we
can predict molecular phenotypes from CT images. We also validate a radiomic model for HPV …
can predict molecular phenotypes from CT images. We also validate a radiomic model for HPV …
[HTML][HTML] Heterogeneity of tumor-infiltrating lymphocytes ascribed to local immune status rather than neoantigens by multi-omics analysis of glioblastoma multiforme
L Feng, H Qian, X Yu, K Liu, T Xiao, C Zhang… - Scientific reports, 2017 - nature.com
… TCR sequencing data analysis … We used VDJtools 26 to accomplish the basic statistics
and diversity analysis (… of TILs in GBM through an integrated analysis of multi-omics data. …
and diversity analysis (… of TILs in GBM through an integrated analysis of multi-omics data. …
[HTML][HTML] Deep learning in head and neck tumor multiomics diagnosis and analysis: review of the literature
X Wang, B Li - Frontiers in Genetics, 2021 - frontiersin.org
… in tumor diagnosis and multi-omics analysis. Supplementary Figure 2 | A flow chart
demonstrating the difficulties and expectation of DL in tumor diagnosis and multi-omics analysis. …
demonstrating the difficulties and expectation of DL in tumor diagnosis and multi-omics analysis. …
[HTML][HTML] Mononuclear phagocyte system-related multi-omics features yield head and neck squamous cell carcinoma subtypes with distinct overall survival, drug, and …
C Zhang, J Deng, K Li, G Lai, H Liu, Y Zhang… - Journal of Cancer …, 2024 - Springer
… for MPS through differential analysis at the single-cell level and utilize “similarity network
fusion” and “MoCluster” algorithms to cluster patients’ multi-omics features. Subsequently, …
fusion” and “MoCluster” algorithms to cluster patients’ multi-omics features. Subsequently, …
[HTML][HTML] Cervical Cancer Stages, Human Papillomavirus Integration, and Malignant Genetic Mutations: Integrative Analysis of Datasets from Four Different Cohorts
… the corresponding proteins in productive HPV integration, viral carcinogenesis, and
cancer-related conditions. Multi-omics data obtained by HPV capture sequencing, RNA sequencing, …
cancer-related conditions. Multi-omics data obtained by HPV capture sequencing, RNA sequencing, …
Discovery of HPV-associated genomic alterations in cervical cancer
VL Porter - 2024 - open.library.ubc.ca
… HPV integration events ............................... 69 2.2.10 ERVs are upregulated around HPV
integration … 62 Figure 2.10 Survival and prognostic value of HPV clade and other characteristics. ..…
integration … 62 Figure 2.10 Survival and prognostic value of HPV clade and other characteristics. ..…