Human papillomavirus genome integration in squamous carcinogenesis: what have next‐generation sequencing studies taught us?

IJ Groves, N Coleman - The Journal of pathology, 2018 - Wiley Online Library
… latter methods can only detect transcriptionally active virus integrants 2. … Integration loci
are associated with chromosome-fragile, DNase-hypersensitive and transcriptionally active sites

Short- and long-range cis interactions between integrated HPV genomes and cellular chromatin dysregulate host gene expression in early cervical carcinogenesis

IJ Groves, ELA Drane, M Michalski, JM Monahan… - PLoS …, 2021 - journals.plos.org
sites of transcriptional activity and chromatin marks of promoters/enhancers. Whether the
orientation of the HPV genome after integrationintegrated HPV16 genome remains unknown. …

Characterization of the human papillomavirus (HPV) integration sites into genital cancers

C Annunziata, L Buonaguro, FM Buonaguro… - Pathology & Oncology …, 2012 - Springer
… and fragile sites, translocation break points, and transcriptional active … of HPV integration
sites in five penile carcinoma samples all positive for HPV16 and all containing integrated viral …

Detection of transcriptionally active high-risk HPV in patients with head and neck squamous cell carcinoma as visualized by a novel E6/E7 mRNA in situ hybridization …

JA Bishop, XJ Ma, H Wang, Y Luo, PB Illei… - The American journal …, 2012 - journals.lww.com
HPV E6/E7 transcripts by RNA ISH is ideal because it confirms the presence of integrated and
transcriptionally active … , whereas most HNSCCs arising in nonoropharyngeal sites do not. …

Human papillomavirus type 16 (HPV-16) genomes integrated in head and neck cancers and in HPV-16-immortalized human keratinocyte clones express chimeric …

MJ Lace, JR Anson, JP Klussmann, DH Wang… - Journal of …, 2011 - Am Soc Microbiol
… from clonal cultures to assess HPV persistence and transcription as described above. … can
be produced from the same integrated HPV genomes, provided the HPV SA sites (eg, SA 3358…

Integrated analysis of whole-genome ChIP-Seq and RNA-Seq data of primary head and neck tumor samples associates HPV integration sites with open chromatin …

DZ Kelley, EL Flam, E Izumchenko, LV Danilova… - Cancer research, 2017 - AACR
… RPL10, and transcriptionally repressed ZNF333 genes (… active histone marks near the
transcriptionally repressed ZNF333 gene was significantly lower than at the transcriptionally active

Frequent genomic structural alterations at HPV insertion sites in cervical carcinoma

M Peter, N Stransky, J Couturier, P Hupé… - The Journal of …, 2010 - Wiley Online Library
… The localization of HPV integration sites in our cervical cancer series showed a single
integration site in most … Furthermore, as integration preferentially targets transcriptionally active

Preferential sites for viral integration on mammalian genome

NC Popescu, JA DiPaolo - Cancer genetics and cytogenetics, 1989 - Elsevier
… The HPV integration can result in uncontrolled transcription of viral genes and can influence
the balance of virus-cell interaction [74], thus, increasing cell susceptibility to other factors …

Integration and transcription of human papillomavirus type 16 and 18 sequences in cell lines derived from cervical carcinomas

H Shirasawa, Y Tomita, S Sekiya… - Journal of general …, 1987 - microbiologyresearch.org
regions of the HPV genome were integrated in these cell lines, the non-coding region and
an early region … ORFs are intact and transcriptionally active in all five cell lines examined. …

Type-dependent integration frequency of human papillomavirus genomes in cervical lesions

S Vinokurova, N Wentzensen, I Kraus, R Klaes… - Cancer research, 2008 - AACR
… data gathered on HPV integration loci in precancers and cancers have shown accumulation
of integration sites in transcriptional active and fragile chromosomal regions (19, 20) but …