… the integrative genome‐scale model of Escherichia coli in which EBA with experimental and
inferred interactions predicted gene expression profiles. PCC corresponds to the correlation …

… analyses of transcriptomes, proteomes, and phenomes can complement each other and be
integrated to … Furthermore, the multidimensional omics data can be integrated to reconstruct …

Integration host factor (IHF) is a small, heterodimeric DNA-binding protein of Escherichia coli
composed of two subunits, α and β, encoded by the himA and hip genes, respectively. IHF …

… methodology to assess the integration states of newlysynthesized membrane proteins of E.
… to provide ground work for the in vivo analysis of membrane protein integration. Specifically, …

… aureus- and E. coli-induced sepsis, we have analyzed four microarray datasets from GEO
database and integrated results with bioinformatics tools. 42 and 54 DEGs were identified in …

Avian pathogenic Escherichia coli (APEC) causes one of the most common bacterial
diseases of poultry worldwide. Effective control methods are therefore desirable and will be …

… to study IPP toxicity in isoprenol-producing Escherichia coli. We first characterize the physiological
… Next, using multi-omics data, we demonstrate that endogenous E. coli metabolism is …

… Indeed, for Escherichia coli we have only 33 samples with the trifecta of transcriptome,
proteome and metabolome, and even in those cases, not simultaneously. In addition, many data …

An integrated transcriptomic and proteomic analysis was undertaken to determine the
physiological response of Escherichia coli O157:H7 Sakai to steady-state conditions relevant to …

… reaction mechanisms and phenotypic data from genetic knockouts to identify active chemistry
and direct NO targets in Escherichia coli. This approach identified the comprehensive E. …