The arginine regulon of Escherichia coli: whole-system transcriptome analysis discovers new genes and provides an integrated view of arginine regulation
M Caldara, D Charlier, R Cunin - Microbiology, 2006 - microbiologyresearch.org
Analysis of the response to arginine of the Escherichia coli K-12 transcriptome by microarray
hybridization and real-time quantitative PCR provides the first coherent quantitative picture …
hybridization and real-time quantitative PCR provides the first coherent quantitative picture …
Metabolic flux balance analysis and the in silico analysis of Escherichia coli K-12 gene deletions
JS Edwards, BO Palsson - BMC bioinformatics, 2000 - Springer
… Herein, we will analyze the integrated function of the metabolic pathways, and there has
been a long history of mathematical modeling of metabolic networks in cellular systems, which …
been a long history of mathematical modeling of metabolic networks in cellular systems, which …
Challenges in integrating Escherichia coli molecular biology data
A Lourenço, S Carneiro, M Rocha… - Briefings in …, 2011 - academic.oup.com
… the problem of integrating data on the bacterium E. coli K-12 using commonly used sources
and biological entities. Although for some applications a complete analysis of unmatched …
and biological entities. Although for some applications a complete analysis of unmatched …
An integrated approach to optimization of Escherichia coli fermentations using historical data
MC Coleman, KKS Buck… - Biotechnology and …, 2003 - Wiley Online Library
… Abstract: Using a fermentation database for Escherichia coli producing green fluorescent
protein (GFP), we have implemented a novel three-step optimization method to identify the …
protein (GFP), we have implemented a novel three-step optimization method to identify the …
Escherichia coli under Ionic Silver Stress: An Integrative Approach to Explore Transcriptional, Physiological and Biochemical Responses
C Saulou-Berion, I Gonzalez, B Enjalbert, JN Audinot… - PloS one, 2015 - journals.plos.org
… -lethal micromolar concentrations of ionic silver on Escherichia coli, we performed a multi-level …
Integrative analysis of the physiological parameters and the biochemical response of E. …
Integrative analysis of the physiological parameters and the biochemical response of E. …
Examination of the Watershed-Wide Distribution of Escherichia coli along Southern Lake Michigan: an Integrated Approach
RL Whitman, MB Nevers… - Applied and …, 2006 - Am Soc Microbiol
… Using the results of these studies and related published studies, we suggest that a more
integrated model of land-water interaction emerges that may further our understanding of the …
integrated model of land-water interaction emerges that may further our understanding of the …
Determination of the Escherichia coli S-nitrosoglutathione response network using integrated biochemical and systems analysis
… against nitric oxide (NO) in Escherichia coli are well studied, the response elements specific
… Previously, we employed an integrated systems biology approach to unravel the E. coli NO-…
… Previously, we employed an integrated systems biology approach to unravel the E. coli NO-…
An approach to integrated data assessment in a proficiency test on the enumeration of Escherichia coli
…, FK Lücke, C Urmetzer, E Fuchs… - Journal of applied …, 2011 - academic.oup.com
… coli suspension was tested by the organiser for homogeneity and stability. Escherichia coli
… After eliminating, by Youden analysis, two data sets that were considered outliers and eight …
… After eliminating, by Youden analysis, two data sets that were considered outliers and eight …
Genome-Scale Analysis of the Uses of the Escherichia coli Genome: Model-Driven Analysis of Heterogeneous Data Sets
TE Allen, MJ Herrgard, M Liu, Y Qiu… - Journal of …, 2003 - Am Soc Microbiol
… We performed an integrated analysis of genome-scale gene expression in E. coli, based on
… The results from this integrative analysis are threefold: (i) the relative material and energy …
… The results from this integrative analysis are threefold: (i) the relative material and energy …
Dynamics of Time-Lagged Gene-to-Metabolite Networks of Escherichia coli Elucidated by Integrative Omics Approach
H Takahashi, R Morioka, R Ito, T Oshima… - … journal of integrative …, 2011 - liebertpub.com
… When integrating different time series “omics” data, it is necessary to take into consideration
… integrative analysis of time series transcriptomics and metabolomics data of Escherichia coli …
… integrative analysis of time series transcriptomics and metabolomics data of Escherichia coli …