An Integrated Proteomic Approach Uncovers Novel Substrates and Functions of the Lon Protease in Escherichia coli
J Arends, M Griego, N Thomanek, C Lindemann… - …, 2018 - Wiley Online Library
… γ-proteobacterium Escherichia coli encodes five … integrated approach of substrate trapping
and comparative proteomics provided novel insights into the physiological role of Lon in E…
and comparative proteomics provided novel insights into the physiological role of Lon in E…
E. coli integration host factor binds to specific sites in DNA
NL Craig, HA Nash - Cell, 1984 - cell.com
… The integration of bacteriophage lambda into the E. coli chromosome occurs by reciprocal
… The products of integrative recombination are the hybrid sites atfL (BOP’) and attR (POB’) …
… The products of integrative recombination are the hybrid sites atfL (BOP’) and attR (POB’) …
Transcriptional regulatory network discovery via multiple method integration: application to e. coli K12
… We first construct a vector for each gene in E. coli, the dimension of the vector being the
number of genomes used in the analysis (in this study 229). We applied BLASTP to identify …
number of genomes used in the analysis (in this study 229). We applied BLASTP to identify …
Molecular Analysis of Escherichia coli from Retail Meats (2002–2004) from the United States National Antimicrobial Resistance Monitoring System
JR Johnson, JS McCabe, DG White… - Clinical Infectious …, 2009 - academic.oup.com
… For an integrated analysis, PCoA was used to collapse the entire dataset, including VF
gene variants that were omitted from the virulence score calculation, into a small number of …
gene variants that were omitted from the virulence score calculation, into a small number of …
Whole genome analyses of CMY-2-producing Escherichia coli isolates from humans, animals and food in Germany
M Pietsch, A Irrgang, N Roschanski, G Brenner Michael… - BMC genomics, 2018 - Springer
Background Resistance to 3rd-generation cephalosporins in Escherichia coli is mostly
mediated by extended-spectrum beta-lactamases (ESBLs) or AmpC beta-lactamases. Besides …
mediated by extended-spectrum beta-lactamases (ESBLs) or AmpC beta-lactamases. Besides …
Quantitative Genome-Wide Genetic Interaction Screens Reveal Global Epistatic Relationships of Protein Complexes in Escherichia coli
…, A Yeou Hsiung Yu, C Graham, K Jin, E Brown… - PLoS …, 2014 - journals.plos.org
… Overall, this study describes the first genome-scale map of GIs in gram-negative
bacterium, and through integrative analysis with previously derived protein-protein and GC-based …
bacterium, and through integrative analysis with previously derived protein-protein and GC-based …
Rapid and Efficient One-Step Metabolic Pathway Integration in E. coli
MC Bassalo, AD Garst, AL Halweg-Edwards… - ACS synthetic …, 2016 - ACS Publications
… integration of large pathways in Escherichia coli. This strategy allows high efficiency integration
in … To demonstrate the large size capability, we integrated a 10 kb construct to implement …
in … To demonstrate the large size capability, we integrated a 10 kb construct to implement …
The Modular Organization of Protein Interactions in Escherichia coli
JM Peregrin-Alvarez, X Xiong, C Su… - PLoS computational …, 2009 - journals.plos.org
… previous studies by integrating several experimental and computational interaction datasets
to reconstruct an extensive network of functional interactions for E coli with an equivalent …
to reconstruct an extensive network of functional interactions for E coli with an equivalent …
Evolutionary action of mutations reveals antimicrobial resistance genes in Escherichia coli
… , EA integration analysis of clinical and environmental isolates of antibiotic resistant of E. …
Here, we develop a new method, called evolutionary action (EA) integration, to analyze the …
Here, we develop a new method, called evolutionary action (EA) integration, to analyze the …
Growth phase variation of integration host factor level in Escherichia coli
MD Ditto, D Roberts, RA Weisberg - Journal of bacteriology, 1994 - Am Soc Microbiol
… -phase cultures of Escherichia coli K-12. Western immunoblot analysis showed that
cultures … Integration host factor (IHF) of Escherichia coli is a small sequence-specific DNA-binding …
cultures … Integration host factor (IHF) of Escherichia coli is a small sequence-specific DNA-binding …