An Integrated Proteomic Approach Uncovers Novel Substrates and Functions of the Lon Protease in Escherichia coli

J Arends, M Griego, N Thomanek, C Lindemann… - …, 2018 - Wiley Online Library
… γ-proteobacterium Escherichia coli encodes five … integrated approach of substrate trapping
and comparative proteomics provided novel insights into the physiological role of Lon in E

E. coli integration host factor binds to specific sites in DNA

NL Craig, HA Nash - Cell, 1984 - cell.com
… The integration of bacteriophage lambda into the E. coli chromosome occurs by reciprocal
… The products of integrative recombination are the hybrid sites atfL (BOP’) and attR (POB’) …

Transcriptional regulatory network discovery via multiple method integration: application to e. coli K12

J Sun, K Tuncay, AA Haidar, L Ensman… - Algorithms for Molecular …, 2007 - Springer
… We first construct a vector for each gene in E. coli, the dimension of the vector being the
number of genomes used in the analysis (in this study 229). We applied BLASTP to identify …

Molecular Analysis of Escherichia coli from Retail Meats (2002–2004) from the United States National Antimicrobial Resistance Monitoring System

JR Johnson, JS McCabe, DG White… - Clinical Infectious …, 2009 - academic.oup.com
… For an integrated analysis, PCoA was used to collapse the entire dataset, including VF
gene variants that were omitted from the virulence score calculation, into a small number of …

Whole genome analyses of CMY-2-producing Escherichia coli isolates from humans, animals and food in Germany

M Pietsch, A Irrgang, N Roschanski, G Brenner Michael… - BMC genomics, 2018 - Springer
Background Resistance to 3rd-generation cephalosporins in Escherichia coli is mostly
mediated by extended-spectrum beta-lactamases (ESBLs) or AmpC beta-lactamases. Besides …

Quantitative Genome-Wide Genetic Interaction Screens Reveal Global Epistatic Relationships of Protein Complexes in Escherichia coli

…, A Yeou Hsiung Yu, C Graham, K Jin, E Brown… - PLoS …, 2014 - journals.plos.org
… Overall, this study describes the first genome-scale map of GIs in gram-negative
bacterium, and through integrative analysis with previously derived protein-protein and GC-based …

Rapid and Efficient One-Step Metabolic Pathway Integration in Ecoli

MC Bassalo, AD Garst, AL Halweg-Edwards… - ACS synthetic …, 2016 - ACS Publications
integration of large pathways in Escherichia coli. This strategy allows high efficiency integration
in … To demonstrate the large size capability, we integrated a 10 kb construct to implement …

The Modular Organization of Protein Interactions in Escherichia coli

JM Peregrin-Alvarez, X Xiong, C Su… - PLoS computational …, 2009 - journals.plos.org
… previous studies by integrating several experimental and computational interaction datasets
to reconstruct an extensive network of functional interactions for E coli with an equivalent …

Evolutionary action of mutations reveals antimicrobial resistance genes in Escherichia coli

DC Marciano, C Wang, TK Hsu, T Bourquard… - Nature …, 2022 - nature.com
… , EA integration analysis of clinical and environmental isolates of antibiotic resistant of E. …
Here, we develop a new method, called evolutionary action (EA) integration, to analyze the …

Growth phase variation of integration host factor level in Escherichia coli

MD Ditto, D Roberts, RA Weisberg - Journal of bacteriology, 1994 - Am Soc Microbiol
… -phase cultures of Escherichia coli K-12. Western immunoblot analysis showed that
cultures … Integration host factor (IHF) of Escherichia coli is a small sequence-specific DNA-binding …