Identification of genes for complex diseases using integrated analysis of multiple types of genomic data

H Cao, S Lei, HW Deng, YP Wang - 2012 - journals.plos.org
gene shaving algorithm we proposed. Then we apply the method to gene selection with
integrative analysis of both gene … For the purpose of comparison with individual data analysis, …

Integrative analysis of the cancer transcriptome

DR Rhodes, AM Chinnaiyan - Nature genetics, 2005 - nature.com
… , quantitative gene lists, might unify disparate genomic data. When we consider the integrative
analyses highlighted here, we find lists of genes activated in cancer; lists of genes that …

Integrated analysis of weighted gene coexpression network analysis identifying six genes as novel biomarkers for Alzheimer's disease

T Zhang, N Liu, W Wei, Z Zhang… - Oxidative Medicine and …, 2021 - Wiley Online Library
Identification of DEGs between AD and Control Groups To identify genes that markedly
affect AD, we first obtained genes that were differentially expressed between AD patients and …

Identification of osteosarcoma driver genes by integrative analysis of copy number and gene expression data

ML Kuijjer, H Rydbeck, SH Kresse… - Genes …, 2012 - Wiley Online Library
… paired integrative analysis returns more affected genes than the nonpaired integrative analysis.
… In summary, we have shown that an individual gene-based paired integrative analysis of …

Integrated analysis of gene expression by association rules discovery

P Carmona-Saez, M Chagoyen, A Rodriguez… - BMC …, 2006 - Springer
… In this study we present a method for the integrative analysis … The approach integrates gene
annotations and expression data … to the analysis of gene expression datasets in which genes

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

DW Huang, BT Sherman, RA Lempicki - Nature protocols, 2009 - nature.com
… extracting biological meaning from large gene/protein lists. This … and integrated data-mining
environment, to analyze gene lists … a gene list containing any number of common gene

Comprehensive integrative analyses identify GLT8D1 and CSNK2B as schizophrenia risk genes

CP Yang, X Li, Y Wu, Q Shen, Y Zeng, Q Xiong… - Nature …, 2018 - nature.com
… potential role of these genes in SCZ pathogenesis, we performed comprehensive integrative
analyses by integrating data from different layers, including genetic associations from large-…

Integrated analysis of multiple microarray studies to identify novel gene signatures in non-alcoholic fatty liver disease

X Jia, T Zhai - Frontiers in endocrinology, 2019 - frontiersin.org
… : Our integrated analysis identified novel gene … using integrated bioinformatics methods.
In addition, based on the result of this analysis, hub genes identification in the DEGs and gene

Identification of transcription factors (TFs) and targets involved in the cholangiocarcinoma (CCA) by integrated analysis

L Yang, S Feng, Y Yang - Cancer Gene Therapy, 2016 - nature.com
… matrix for gene promoter scanning was also downloaded from TRANSFAC database. On the
basis of the expression signature genes by integrated analysis, we identified DEGs that has …

Integrated analysis of multiple microarray studies to identify novel gene signatures in preeclampsia

Q Kang, W Li, J Xiao, N Yu, L Fan, M Sha, S Ma, J Wu… - Placenta, 2021 - Elsevier
… Our integrated analysis identified novel gene signatures in preeclampsia and subgroups
and will contribute to the understanding of comprehensive molecular changes in preeclampsia. …