Genomic, proteomic, and metabolomic data integration strategies

K Wanichthanarak, JF Fahrmann… - Biomarker …, 2015 - journals.sagepub.com
… the integration of metabolomic with genomic and proteomic … through holistic analyses
integrating measurements across … integration of metabolomic with genomic and proteomic data. …

[HTML][HTML] Integrated proteomics and genomics strategies bring new insight into Candida albicans response upon macrophage interaction

E Fernández-Arenas, V Cabezón, C Bermejo… - … & Cellular Proteomics, 2007 - ASBMB
… of ingested yeasts, a thorough genomics and proteomics analysis was carried out on these
… combination of genomics, proteomics, and network analyses is a powerful strategy to better …

Integrating transcriptome and proteome profiling: Strategies and applications

D Kumar, G Bansal, A Narang, T Basak, T Abbas… - …, 2016 - Wiley Online Library
… rat genome by integrating publicly available RNA-seq and proteomics data using a stringent
analysis strategy 33… Kelkar et al. utilized transcriptomic and proteomics profiling from various …

Proteomics and integrative genomics for unraveling the mysteries of spermatogenesis: the strategies of a team

E Com, N Melaine, F Chalmel, C Pineau - Journal of Proteomics, 2014 - Elsevier
Integrative genomics is becoming a powerful strategy for discovering the biological
significance hidden in proteomic datasets. This work introduces some of the integrative genomic

Integrating cancer genomics and proteomics in the post‐genome era

SM Hanash, MP Bobek, DS Rickman… - PROTEOMICS …, 2002 - Wiley Online Library
… There is currently much interest, as we enter the postgenome era, in developing strategies
for disease investigations that include profiling of normal and diseased tissues across the …

Genome, transcriptome and proteome: the rise of omics data and their integration in biomedical sciences

C Manzoni, DA Kia, J Vandrovcova… - Briefings in …, 2018 - academic.oup.com
… the rise of inter-disciplinary data integration strategies to support a better … between genomics,
transcriptomics and proteomics, … to the global-integrative analytical approach in research. …

Approaches for the study of cancer: towards the integration of genomics, proteomics and metabolomics

J Casado-Vela, A Cebrián… - Clinical and …, 2011 - Springer
… approaches (ie, genomics, metabolomics and proteomics). This … used in genomics,
metabolomics and proteomics. We also … Integration of multiple -omic results and procedures …

Computational proteomics: designing a comprehensive analytical strategy

WWB Goh, L Wong - Drug discovery today, 2014 - Elsevier
proteomic applications: namely computational epigenetics. Finally, we evaluate how integrative
proteomic … cluster, the genomic expression is low while proteomic is high, and vice versa. …

An integrative strategy to identify the entire protein coding potential of prokaryotic genomes by proteogenomics

U Omasits, AR Varadarajan, M Schmid… - Genome …, 2017 - genome.cshlp.org
… Here, we address this unmet need of the microbiology and proteomics community and
present an integrative strategy that takes the MS-friendly DB concept one important step further. …

Novel strategies to address the challenges in top-down proteomics

JA Melby, DS Roberts, EJ Larson… - Journal of the …, 2021 - ACS Publications
… -down proteomics field, particularly in protein solubility, proteome dynamic range, proteome
… low-abundance proteoforms, strategies for multidimensional chromatography separation of …