Integrated transcriptome, proteome and metabolome analyses revealed secondary metabolites and auxiliary carbohydrate metabolism augmenting drought tolerance …

AK Dwivedi, V Singh, K Anwar, A Pareek… - Plant Physiology and …, 2023 - Elsevier
metabolite profiling revealed that aromatic amino acids and soluble sugars contribute majorly
to drought tolerance in rice. The integrated transcriptome… carbohydrate metabolism through …

Integrated analysis of the transcriptome and metabolome in young and mature leaves of Ginkgo biloba L.

J Guo, Y Wu, G Wang, T Wang, F Cao - Industrial Crops and Products, 2020 - Elsevier
… Although many studies have considered differential expression in the ginkgo transcriptome,
the molecular regulatory pathways and secondary metabolites in young and mature leaves …

Assessing and integrating the transcriptome analysis with plant development, trichomes, and secondary metabolites yield potential in Mentha arvensisL

A Mishra, P Gupta, RK Lal, SS Dhawan - Plant Physiology and …, 2021 - Elsevier
… Simultaneously, RNA sequence based transcriptome analysis was performed foran insight in
… , this is the first attempt to integrate metabolite gene expression and transcriptome data in a …

MIDDAS-M: Motif-Independent De Novo Detection of Secondary Metabolite Gene Clusters through the Integration of Genome Sequencing and Transcriptome Data

M Umemura, H Koike, N Nagano, T Ishii, J Kawano… - PloS one, 2013 - journals.plos.org
… that fungal secondary metabolites are biosynthesized by … In spite of limited number of
secondary metabolites identified … the expected numbers of secondary metabolite biosynthetic (SMB…

Integrated Transcriptome and Metabolome Analysis to Identify Sugarcane Gene Defense against Fall Armyworm (Spodoptera frugiperda) Herbivory

AM Li, M Wang, ZL Chen, CX Qin, F Liao, Z Wu… - International Journal of …, 2022 - mdpi.com
… verified the inducement of specific metabolites of amino acids and secondary metabolites
by insect herbivory. Finally, association analysis of the transcriptome and metabolome by the …

Integrated RNA-seq and sRNA-seq analysis reveals miRNA effects on secondary metabolism in Solanum tuberosum L

Y Qiao, J Zhang, J Zhang, Z Wang, A Ran… - Molecular Genetics and …, 2017 - Springer
… pathways regulated by the miRNA–mRNA pairs, an integrated omics (sRNAome and
transcriptome) analysis was performed to potato under light stimulus. A total of 31 and 48 miRNAs …

Integrated Transcriptome and Metabolome Analysis Reveals Key Metabolites Involved in Camellia oleifera Defense against Anthracnose

C Yang, P Wu, X Yao, Y Sheng, C Zhang, P Lin… - International journal of …, 2022 - mdpi.com
… Plants have evolved a variety of branches of phenylpropanoid metabolism, producing
flavonoids, lignans, cinnamic acids, amides and other metabolites. These secondary metabolites

An integrated transcriptome and metabolome approach reveals the accumulation of taste-related metabolites and gene regulatory networks during watermelon fruit …

C Gong, H Zhu, X Lu, D Yang, S Zhao, MJ Umer, N He… - Planta, 2021 - Springer
… Thus we focused on analyzing these two types of secondary metabolites exploring their
negative role in the formation of watermelon taste. 14 cucurbitacins were just detected in WL and …

Integrated analyses of transcriptome and metabolome provides new insights into the primary and secondary metabolism in response to nitrogen deficiency and soil …

L Yang, Q Wu, H Liang, L Yin, P Shen - Frontiers in Plant Science, 2022 - frontiersin.org
… Key genes involved in these metabolic pathways also showed corresponding changes
based on transcriptome analysis. In this study, the integrated transcriptome and metabolome …

Integrated Transcriptome and Metabolome Analysis Revealed That Flavonoid Biosynthesis May Dominate the Resistance of Zanthoxylum bungeanum against Stem …

P Li, Z Ruan, Z Fei, J Yan, G Tang - Journal of Agricultural and …, 2021 - ACS Publications
… for metabolomics analysis of secondary metabolites, which were marked as FD-T and DJ-T,
respectively. The sampling method was the same as the transcriptome analysis experiment, …