[HTML][HTML] Applications and analytical tools of cell communication based on ligand-receptor interactions at single cell level
F Ma, S Zhang, L Song, B Wang, L Wei, F Zhang - Cell & Bioscience, 2021 - Springer
… of ligand-receptor interaction for intercellular communication … tools for ligand-receptor
interactions on single-cell level. … ligand-receptor interactions in cell communication research. …
interactions on single-cell level. … ligand-receptor interactions in cell communication research. …
Cellinker: a platform of ligand–receptor interactions for intercellular communication analysis
Y Zhang, T Liu, J Wang, B Zou, L Li, L Yao… - …, 2021 - academic.oup.com
… L–R interactions that play roles in cell–cell communication. We aimed to provide a useful
platform for studies on cell–cell communication mediated by L–R interactions. The current …
platform for studies on cell–cell communication mediated by L–R interactions. The current …
CellPhoneDB: inferring cell–cell communication from combined expression of multi-subunit ligand–receptor complexes
M Efremova, M Vento-Tormo, SA Teichmann… - Nature protocols, 2020 - nature.com
… ligand–receptor interactions between two cell states on the basis of expression of a receptor
by one cell state and a ligand by another cell … , the percentage of cells expressing the gene …
by one cell state and a ligand by another cell … , the percentage of cells expressing the gene …
Cellular communication in a 'virtual lab': going beyond the classical ligand-receptor interaction
MM Gladka - Cardiovascular research, 2020 - academic.oup.com
… communication by ligand–receptor interaction and (B) NicheNet-constructed approach to
prioritize ligand–receptor interactions … (C) Data integration to predict a ligand-target gene link. …
prioritize ligand–receptor interactions … (C) Data integration to predict a ligand-target gene link. …
[HTML][HTML] Deciphering cell–cell interactions and communication from gene expression
E Armingol, A Officer, O Harismendy… - Nature Reviews …, 2021 - nature.com
… Juxtacrine, that is, contact-dependent, cell–cell communication relies on … communication
has increased our understanding of stem cell fates and revealed ligand–receptor interactions …
has increased our understanding of stem cell fates and revealed ligand–receptor interactions …
CellTalkDB: a manually curated database of ligand–receptor interactions in humans and mice
… Our results could facilitate the inference and understanding of the LR-interaction-based
cell–cell communications, which might provide new insights into the mechanism underlying …
cell–cell communications, which might provide new insights into the mechanism underlying …
Cellenboost: a boosting-based ligand-receptor interaction identification model for cell-to-cell communication inference
… ith ligand/the jth receptor in scRNA-seq data and m cell types {… Li,k1 /Lj,k2 of ligand i/receptor
j in a cell type Ck1 /Ck2 . Next, … scores ligand i-receptor j interaction that mediates two cell …
j in a cell type Ck1 /Ck2 . Next, … scores ligand i-receptor j interaction that mediates two cell …
CellDialog: A Computational Framework for Ligand-receptor-mediated Cell-cell Communication Analysis III
L Peng, W Xiong, C Han, Z Li… - IEEE Journal of …, 2023 - ieeexplore.ieee.org
… Chen, “Cellcomnet: A heterogeneous deep learning-based ligandreceptor interaction
identification framework for cell-cell communication inference,” Computer in Biology and Medicine, …
identification framework for cell-cell communication inference,” Computer in Biology and Medicine, …
CellCall: integrating paired ligand–receptor and transcription factor activities for cell–cell communication
Y Zhang, T Liu, X Hu, M Wang, J Wang… - Nucleic acids …, 2021 - academic.oup.com
… Nichenet built an integrated network including ligand receptors, intracellular signaling and
… interactions were predicted). Although SingleCellSignalR collected intracellular signaling …
… interactions were predicted). Although SingleCellSignalR collected intracellular signaling …
[HTML][HTML] Identification of cell-to-cell interactions by ligand-receptor pairs in human fetal heart
… ligand-receptor pairs including 65 ligands and 58 receptors specifically expressed in one of
the nine cell … In this study, we identified that the cell-cell communication had spatial patterns …
the nine cell … In this study, we identified that the cell-cell communication had spatial patterns …
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