[HTML][HTML] The lncRNA toolkit: databases and in silico tools for lncRNA analysis

HR Pinkney, BM Wright, SD Diermeier - Non-coding RNA, 2020 - mdpi.com
… of lncRNAs has … lncRNAs act, bioinformatic tools and databases are invaluable. Here, we
review a selection of computational tools and databases for the in silico analysis of lncRNAs, …

lncRNA-miRNA-mRNA interaction network for colorectal cancer; An in silico analysis

T Ghasemi, M Khalaj-Kondori, P Asadi - Computational biology and …, 2020 - Elsevier
… GEO and further analyzed the data in silico to identify differentially expressed mRNAs and
lncRNAs in CRC. Then, we revealed the regulatory networks between CRC-related lncRNAs/…

[HTML][HTML] Spotlight on exosomal non-coding RNAs in breast cancer: An in silico analysis to identify potential lncRNA/circRNA-miRNA-Target Axis

O Ashekyan, S Abdallah, AA Shoukari… - International journal of …, 2022 - mdpi.com
… (miRNAs), long non-coding RNAs (lncRNAs), and the recently discovered circular RNA (…
Finally, benefiting from the miRNA sponging mechanism of action of lncRNAs and circRNAs…

Bioinformatics tools for lncRNA research

J Iwakiri, M Hamada, K Asai - Biochimica et Biophysica Acta (BBA)-Gene …, 2016 - Elsevier
… In conclusion, predicting lncRNA–protein interactions by using bioinformatics tools is still a
… [95] and other tools [96] are promising in-silico tools for mutational analyses of lncRNAs. In …

Analyzing miRNA–lncRNA interactions

MD Paraskevopoulou, AG Hatzigeorgiou - Long non-coding RNAs …, 2016 - Springer
… This chapter focuses on the study of miRNA–lncRNA interactions with either in silico or
experimentally supported analyses. The proposed methodologies can be appropriately adapted …

[HTML][HTML] Bioinformatic tools for the analysis and prediction of ncRNA interactions

A Rincón-Riveros, D Morales, JA Rodríguez… - International Journal of …, 2021 - mdpi.com
… databases, bioinformatic tools, and new in silico strategies that allow the establishment or
prediction of biological interactions of ncRNAs, particularly miRNAs and lncRNAs. The ncRNA …

[HTML][HTML] Expression of lncRNAs in low-grade gliomas and glioblastoma multiforme: an in silico analysis

BJ Reon, J Anaya, Y Zhang, J Mandell, B Purow… - PLoS …, 2016 - journals.plos.org
… of lncRNAs in brain cancer, we performed a global analysis … expressed lncRNAs, we selected
only lncRNAs with a … FPKM); 4,288 lncRNAs in LGGs and 3,297 lncRNAs in GBMs met this …

A systematic evaluation of the computational tools for lncRNA identification

H Zheng, A Talukder, X Li, H Hu - Briefings in Bioinformatics, 2021 - academic.oup.com
… (lncRNAs) is important to study lncRNAs and their functions. Despite the existence of many
computation tools for lncRNA … systematic evaluation of these tools on common datasets and …

The regulatory role of HOX interacting lncRNA in oral cancer—An in silico analysis

DS Basavarajappa, KSR Padam… - Journal of Oral …, 2022 - Wiley Online Library
… ) tool 29 provided data that was thoroughly analyzed and … The LncRNA Ontology 30 tool
infers the functions of lncRNAs … expressed HOX-interacting lncRNAs. The results were tabulated …

[Retracted] The Impact of lncRNA on Diabetic Kidney Disease: Systematic Review and In Silico Analyses

Y Zhao, G Yan, J Mi, G Wang, M Yu… - Computational …, 2022 - Wiley Online Library
… that analyzed the expression of lncRNA in DKD-related tissues, the involvement of lncRNAs
… Although lncRNAs seem to be a good candidate for DKD biomarkers and therapeutic targets…