[HTML][HTML] The lncRNA toolkit: databases and in silico tools for lncRNA analysis
HR Pinkney, BM Wright, SD Diermeier - Non-coding RNA, 2020 - mdpi.com
… of lncRNAs has … lncRNAs act, bioinformatic tools and databases are invaluable. Here, we
review a selection of computational tools and databases for the in silico analysis of lncRNAs, …
review a selection of computational tools and databases for the in silico analysis of lncRNAs, …
lncRNA-miRNA-mRNA interaction network for colorectal cancer; An in silico analysis
T Ghasemi, M Khalaj-Kondori, P Asadi - Computational biology and …, 2020 - Elsevier
… GEO and further analyzed the data in silico to identify differentially expressed mRNAs and
lncRNAs in CRC. Then, we revealed the regulatory networks between CRC-related lncRNAs/…
lncRNAs in CRC. Then, we revealed the regulatory networks between CRC-related lncRNAs/…
[HTML][HTML] Spotlight on exosomal non-coding RNAs in breast cancer: An in silico analysis to identify potential lncRNA/circRNA-miRNA-Target Axis
O Ashekyan, S Abdallah, AA Shoukari… - International journal of …, 2022 - mdpi.com
… (miRNAs), long non-coding RNAs (lncRNAs), and the recently discovered circular RNA (…
Finally, benefiting from the miRNA sponging mechanism of action of lncRNAs and circRNAs…
Finally, benefiting from the miRNA sponging mechanism of action of lncRNAs and circRNAs…
Bioinformatics tools for lncRNA research
… In conclusion, predicting lncRNA–protein interactions by using bioinformatics tools is still a
… [95] and other tools [96] are promising in-silico tools for mutational analyses of lncRNAs. In …
… [95] and other tools [96] are promising in-silico tools for mutational analyses of lncRNAs. In …
Analyzing miRNA–lncRNA interactions
MD Paraskevopoulou, AG Hatzigeorgiou - Long non-coding RNAs …, 2016 - Springer
… This chapter focuses on the study of miRNA–lncRNA interactions with either in silico or
experimentally supported analyses. The proposed methodologies can be appropriately adapted …
experimentally supported analyses. The proposed methodologies can be appropriately adapted …
[HTML][HTML] Bioinformatic tools for the analysis and prediction of ncRNA interactions
A Rincón-Riveros, D Morales, JA Rodríguez… - International Journal of …, 2021 - mdpi.com
… databases, bioinformatic tools, and new in silico strategies that allow the establishment or
prediction of biological interactions of ncRNAs, particularly miRNAs and lncRNAs. The ncRNA …
prediction of biological interactions of ncRNAs, particularly miRNAs and lncRNAs. The ncRNA …
[HTML][HTML] Expression of lncRNAs in low-grade gliomas and glioblastoma multiforme: an in silico analysis
… of lncRNAs in brain cancer, we performed a global analysis … expressed lncRNAs, we selected
only lncRNAs with a … FPKM); 4,288 lncRNAs in LGGs and 3,297 lncRNAs in GBMs met this …
only lncRNAs with a … FPKM); 4,288 lncRNAs in LGGs and 3,297 lncRNAs in GBMs met this …
A systematic evaluation of the computational tools for lncRNA identification
… (lncRNAs) is important to study lncRNAs and their functions. Despite the existence of many
computation tools for lncRNA … systematic evaluation of these tools on common datasets and …
computation tools for lncRNA … systematic evaluation of these tools on common datasets and …
The regulatory role of HOX interacting lncRNA in oral cancer—An in silico analysis
DS Basavarajappa, KSR Padam… - Journal of Oral …, 2022 - Wiley Online Library
… ) tool 29 provided data that was thoroughly analyzed and … The LncRNA Ontology 30 tool
infers the functions of lncRNAs … expressed HOX-interacting lncRNAs. The results were tabulated …
infers the functions of lncRNAs … expressed HOX-interacting lncRNAs. The results were tabulated …
[Retracted] The Impact of lncRNA on Diabetic Kidney Disease: Systematic Review and In Silico Analyses
Y Zhao, G Yan, J Mi, G Wang, M Yu… - Computational …, 2022 - Wiley Online Library
… that analyzed the expression of lncRNA in DKD-related tissues, the involvement of lncRNAs
… Although lncRNAs seem to be a good candidate for DKD biomarkers and therapeutic targets…
… Although lncRNAs seem to be a good candidate for DKD biomarkers and therapeutic targets…
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- databases and in silico tools
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- gene co-expression network analysis key lncrnas
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