Low-abundance drug-resistant viral variants in chronically HIV-infected, antiretroviral treatment–naive patients significantly impact treatment outcomes

BB Simen, JF Simons, KH Hullsiek… - The Journal of …, 2009 - academic.oup.com
… nearly doubled when low-abundance resistant variants identified … our results, suggest that
low-abundance drug-resistant HIV … , and that these low-abundance drug-resistant variants may …

Bacteriophage transfer during faecal microbiota transplantation in Clostridium difficile infection is associated with treatment outcome

T Zuo, SH Wong, K Lam, R Lui, K Cheung, W Tang… - Gut, 2018 - gut.bmj.com
… a significantly lower abundance of Caudovirales and Anelloviridae (both p<0.05) compared
with healthy controls, while no marked difference was observed in the relative abundance of …

Use of culture and molecular analysis to determine the effect of antibiotic treatment on microbial community diversity and abundance during exacerbation in patients …

MM Tunney, ER Klem, AA Fodor, DF Gilpin, TF Moriarty… - Thorax, 2011 - thorax.bmj.com
lower abundance. These findings suggest that these very different methods are similarly
effective at detecting abundant … improve treatment strategies and outcome for patients with CF. …

Low-abundance HIV drug-resistant viral variants in treatment-experienced persons correlate with historical antiretroviral use

T Le, J Chiarella, BB Simen, B Hanczaruk, M Egholm… - PloS one, 2009 - journals.plos.org
… of low-abundance DRMs in treatment-experienced patients being evaluated for virologic
failure, and whether unrecognized low-abundance … and patterns of low-abundance DRMs in …

A pilot design for observational studies: Using abundant data thoughtfully

RC Aikens, D Greaves, M Baiocchi - Statistics in Medicine, 2020 - Wiley Online Library
outcome of the individual under treatment assignment T i . … of Γ , shifts the treatment
probabilities of certain individuals in … terms of their likely outcomes in the absence of treatment (ie, …

Lung microbiota and bacterial abundance in patients with bronchiectasis when clinically stable and during exacerbation

MM Tunney, GG Einarsson, L Wei, M Drain… - American journal of …, 2013 - atsjournals.org
… pathogenesis, and treatment outcomes. … in low abundance with similar patterns of phyla
distribution in clinically stable patients and patients at the onset of exacerbation. After treatment

Dietary impacts on changes in diversity and abundance of the murine microbiome during progression and treatment of cancer

H Paden, N Kurbatfinski, JW Poelstra, K Ormiston… - Nutrients, 2023 - mdpi.com
… is recognized for its impact on cancer treatment outcomes. Little research has reported …
showed lower abundance in mice consuming either of the low-fat diets with low and high sucrose, …

The success of fecal microbial transplantation in Clostridium difficile infection correlates with bacteriophage relative abundance in the donor: a retrospective cohort …

H Park, MR Laffin, J Jovel, B Millan, JE Hyun… - Gut …, 2019 - Taylor & Francis
Full article: The success of fecal microbial transplantation in Clostridium difficile infection
correlates with bacteriophage relative abundance in the donor: a retrospective cohort study …

[HTML][HTML] A comprehensive study design reveals treatment-and transcript abundance–dependent concordance between rna-seq and microarray data

C Wang, B Gong, PR Bushel, J Thierry-Mieg… - Nature …, 2014 - ncbi.nlm.nih.gov
Low abundance contributes to discrepancies … In summary, the treatment effects and the
abundance of the genes dictate many observations in RNA-seq and its comparison with the …

Early empiric antibiotic use in preterm infants is associated with lower bacterial diversity and higher relative abundance of Enterobacter

C Greenwood, AL Morrow, AJ Lagomarcino… - The Journal of …, 2014 - Elsevier
… , and being sufficiently abundant to allow robust modeling. The much lower abundance of
other … with larger studies of antibiotic use and increased risk of these outcomes.13, 14, 15 …