Computational modeling of mammalian signaling networks

JJ Hughey, TK Lee, MW Covert - … Reviews: Systems Biology …, 2010 - Wiley Online Library
network of interest. Next, we review the mathematical approaches that are used to model
signaling network … which computational modeling of a signaling network has led to new insights …

High-throughput mapping of a dynamic signaling network in mammalian cells

M Barrios-Rodiles, KR Brown, B Ozdamar, R Bose… - Science, 2005 - science.org
signaling networks convey information in vertebrates, we developed high-throughput LUMIER
to systematically map PPIs in mammalian … Flag-tagged partners in mammalian cells. Their …

Mammalian circadian signaling networks and therapeutic targets

AC Liu, WG Lewis, SA Kay - Nature chemical biology, 2007 - nature.com
… Here we review the organization of the circadian signaling network and the synchronization
mechanisms of the circadian timekeeping system (see Box 1 and Fig. 2 for definitions of …

[HTML][HTML] Toll-like receptors, associated biological roles, and signaling networks in non-mammals

L Nie, SY Cai, JZ Shao, J Chen - Frontiers in immunology, 2018 - frontiersin.org
The innate immune system is the first line of defense against pathogens, which is initiated
by the recognition of pathogen-associated molecular patterns (PAMPs) and endogenous …

Receptor-based mechanism of relative sensing and cell memory in mammalian signaling networks

E Lyashenko, M Niepel, PD Dixit, SK Lim, PK Sorger… - Elife, 2020 - elifesciences.org
… absolute changes in extracellular signals enables cells to make … mammalian signaling
networks store the memories of past stimuli and subsequently use them to compute relative signals

[HTML][HTML] Mammalian target of rapamycin (mTOR) signaling network in skeletal myogenesis

Y Ge, J Chen - Journal of Biological Chemistry, 2012 - ASBMB
… In this minireview, we present an emerging view of the signaling network underlying mTOR
regulation of myogenesis, which contrasts with the well established mechanisms in the …

[HTML][HTML] Rho GTPases at the crossroad of signaling networks in mammals

JC Hervé, N Bourmeyster - Small GTPases, 2015 - Taylor & Francis
The following collection of reviews concerning Rho GTPases was elaborated in the
perspective of a special anniversary. 30 years ago, Pascal Madaule, postdoc in Richard Axel’s …

[PDF][PDF] Pausing of RNA polymerase II regulates mammalian developmental potential through control of signaling networks

LH Williams, G Fromm, NG Gokey, T Henriques… - Molecular cell, 2015 - cell.com
The remarkable capacity for pluripotency and self-renewal in embryonic stem cells (ESCs)
requires a finely tuned transcriptional circuitry wherein the pathways and genes that initiate …

Topological peculiarities of mammalian networks with different functionalities: transcription, signal transduction and metabolic networks

B Goemann, E Wingender, AP Potapov - 2011 - publications.goettingen-research …
… To the best of our knowledge, this particular feature of the mammalian signaling network has
not yet been reported, although this observation is in agreement with the general functional …

2‐Cys peroxiredoxins: emerging hubs determining redox dependency of mammalian signaling networks

J Park, S Lee, S Lee, SW Kang - International journal of cell …, 2014 - Wiley Online Library
… review, we collect the evidence for specific signaling functions of typical 2-Cys Prxs with low
K m for H 2 O 2 and discuss its implication as a conceptually new hub in signaling networks. …