Increasing Signal Specificity of the TOL Network of Pseudomonas putida mt-2 by Rewiring the Connectivity of the Master Regulator XylR

A de Las Heras, S Fraile, V de Lorenzo - 2012 - journals.plos.org
… operons encoded in the TOL plasmid pWW0 of Pseudomonas putida, … TOL operon, Pu),
the reporter system displayed an increased transcriptional capacity in the resulting network for …

Escherichia coli tol and rcs genes participate in the complex network affecting curli synthesis

A Vianney, G Jubelin, S Renault, C Dorel… - …, 2005 - microbiologyresearch.org
… First, we attempted to evaluate the impact of the Δtol mutations on the activity of the
response regulator CpxR. A cpxR–lacZ transcriptional fusion was constructed in MG1655 (see …

The logic layout of the TOL network of Pseudomonas putida pWW0 plasmid stems from a metabolic amplifier motif (MAM) that optimizes biodegradation of m-xylene

R Silva-Rocha, H de Jong, J Tamames… - BMC Systems Biology, 2011 - Springer
… The chief control step for TOL expression relies … regulator of the NtrC family targets two σ
54 -dependent promoters, Pu and Ps1 (Figure 1). This network motif, where a master regulator

Regulatory role of MlrA in transcription activation of csgD, the master regulator of biofilm formation in Escherichia coli

H Ogasawara, K Yamamoto… - FEMS microbiology …, 2010 - academic.oup.com
… In concert with the regulatory role of CsgD as the master regulator of biofilm formation under
stressful conditions, the major sigma RpoD and stationary phase-specific RpoS participate …

Novel genes dramatically alter regulatory network topology in amphioxus

Q Zhang, CM Zmasek, LJ Dishaw, MG Mueller, Y Ye… - Genome biology, 2008 - Springer
… new connections inside an existing network or between different networks [4, 5… networks
and that 'more advanced' organisms add new elements to the canonical 'cores' of these networks

Negative Autogenous Control of the Master Type III Secretion System Regulator HrpL in Pseudomonas syringae

C Waite, J Schumacher, M Jovanovic, M Bennett… - MBio, 2017 - Am Soc Microbiol
… We propose that the master regulator of its entire T3SS gene … into the Hrp regulatory
network remains poorly understood. … New insights into the regulatory networks underlying the …

[PDF][PDF] MYC2: the master in action

K Kazan, JM Manners - Molecular plant, 2013 - cell.com
… a master regulator of most aspects of the jasmonate (JA) signaling pathway in Arabidopsis.
MYC2 coordinates JA-mediated defense responses by antagonistically regulatingnetwork is …

Spatial modelling of transcription dynamics in bacterial gene regulatory networks

R Stoof - 2021 - theses.ncl.ac.uk
networks adjusting pathways depending on their environment. Over the last two decades,
research has developed an understanding of these networks … However, the networks that are …

The regulatory logic of m‐xylene biodegradation by Pseudomonas putida mt‐2 exposed by dynamic modelling of the principal node Ps/Pr of the TOL plasmid

M Koutinas, MC Lam, A Kiparissides… - Environmental …, 2010 - Wiley Online Library
… The structure of the extant transcriptional control network of the TOL plasmid pWW0 born by
… of the master regulator of TOL is a common feature of SIMs where the master regulator is …

… PSEUDOMONAS TOL PLASMID CATABOLIC OPERONS IS ACHIEVED THROUGH AN INTERPLAY OF HOST FACTORS AND PLASMID-ENCODED REGULATORS

JL Ramos, S Marqués, KN Timmis - Annual review of …, 1997 - annualreviews.org
master regulator XylR is expressed, how this protein becomes activated by effector binding,
and how the active regulator … an illuminating model of the regulatory networks in prokaryotes. …