Calcium-dependent networks in dopamine–glutamate interaction: the role of postsynaptic scaffolding proteins

A de Bartolomeis, C Tomasetti - Molecular neurobiology, 2012 - Springer
… modulates the gene expression and the function of specific PSD proteins, the “scaffolding”
proteins (Homer, Shank, and PSD95), belonging to a complex Ca 2+ -regulated network that …

The essential Rhodobacter sphaeroides CenKR two-component system regulates cell division and envelope biosynthesis

BD Lakey, KS Myers, F Alberge, EL Mettert… - Plos …, 2022 - journals.plos.org
… CenR as a direct regulator of the Tol subunits of the Tol-Pal … coli RseA-σ E system is another
master regulator of both … kinase/regulator pairs to predict specific interaction networks for …

Predictive network modeling in human induced pluripotent stem cells identifies key driver genes for insulin responsiveness

I Carcamo-Orive, MYR Henrion, K Zhu… - PLoS computational …, 2020 - journals.plos.org
master regulators upstream of a set of user-defined downstream effector genes (in our study,
we used the genes from the selected modules and the DE genes) given a causal network

[PDF][PDF] Precursor B lymphoblastic lymphomas originating from follicular lymphomas express hypermutated immunoglobulin gamma heavy chains and surrogate light …

…, LA Smit, BJ Biemond, MJM Oud, E Schilder-Tol… - The role of antigen in the … - pure.uva.nl
… the tumor cells expanded in networks of follicular dendritic cells. … PAX5 , a master regulator
of B-cell lineage commitment and … ), which encodes Ikaros, another master regulator of B-cell …

Coronin 1B Controls Endothelial Actin Dynamics at Cell–Cell Junctions and Is Required for Endothelial Network Assembly

AC Werner, LT Weckbach, M Salvermoser… - Frontiers in Cell and …, 2020 - frontiersin.org
… new regulator of JAIL formation, cell–cell junction and the assembly of endothelial network
… is needed for vessel network assembling, we conducted tube network formation assays on …

A dynamic network of proteins facilitate cell envelope biogenesis in gram-negative bacteria

CLB Graham, H Newman, FN Gillett, K Smart… - International Journal of …, 2021 - mdpi.com
… We detail the network of protein interactions that assist in the formation of peptidoglycan and
… , peptidoglycan and inner membrane proteins such as Tol machinery across species [62]. …

Roles of OmpX, an outer membrane protein, on virulence and flagellar expression in uropathogenic Escherichia coli

H Hirakawa, K Suzue, A Takita, W Kamitani… - Infection and …, 2021 - Am Soc Microbiol
… Deletion of ompX decreases transcription of flhD, which encodes a master regulator for …
the fliA gene is activated by FlhD, a master regulator of flagellar expression (22). We measured …

GABA promotes β‐cell proliferation, but does not overcome impaired glucose homeostasis associated with diet‐induced obesity

A Untereiner, S Abdo, A Bhattacharjee… - The FASEB …, 2019 - Wiley Online Library
network GABA affects, we used a computational method called iRegulon (27). iRegulon
identifies master regulators … No changes were observed in insulin tolerance, glucagon secretion (…

Comprehensive Proteomics Analysis of Polyhydroxyalkanoate (PHA) Biology in Pseudomonas putida KT2440: The Outer Membrane Lipoprotein OprL is a Newly …

S Kelly, JL Tham, K McKeever, E Dillon… - Molecular & Cellular …, 2024 - ASBMB
network comprising 434 connected proteins. Finally, we confirmed that the outer membrane
protein OprL (the Pal component of the Pal-Tol … that a wide network of protein interactions is …

Meta-analysis of expression signatures of muscle atrophy: gene interaction networks in early and late stages

E Calura, S Cagnin, A Raffaello, P Laveder… - BMC genomics, 2008 - Springer
… edges, we zoomed into the networks identifying specific pathways commonly involved in the
… the network with SMAD3/4, MYC, MAX, SP1, CDKN1A/B proteins involved in regulating cell …