Phylogenetic approaches for describing and comparing the diversity of microbial communities
AP Martin - Applied and environmental microbiology, 2002 - Am Soc Microbiol
… Phylogenetic analysis of close matches from the GenBank database indicated that clade B
contains sequences related to Rhodobacter, Paracoccus, and Aquabacter. Attempts to gain …
contains sequences related to Rhodobacter, Paracoccus, and Aquabacter. Attempts to gain …
Molecular phylogenetic analysis of a soil microbial community in a soybean field
T Ueda, Y Suga, T Matsuguchi - European journal of soil …, 1995 - Wiley Online Library
… sequenced portion for phylogenetic analyses and we propose the domain that correspond
to nucleotides 1101 to 1407 in E. coli for international study of soil microbial communities. In …
to nucleotides 1101 to 1407 in E. coli for international study of soil microbial communities. In …
Phylogenetic analysis and in situ identification of the intestinal microbial community of rainbow trout (Oncorhynchus mykiss, Walbaum)
I Huber, B Spanggaard, KF Appel… - Journal of applied …, 2004 - academic.oup.com
… , structure and stability of this microbial ecosystem. We showed that molecular methods
can be applied for a detailed analysis of the microbial community structure of fish intestine. …
can be applied for a detailed analysis of the microbial community structure of fish intestine. …
Comparative phylogenetic analysis of microbial communities in pristine and hydrocarbon-contaminated Alpine soils
D Labbé, R Margesin, F Schinner… - FEMS microbiology …, 2007 - academic.oup.com
… analysis of PCR-amplified 16S rRNA gene fragments This study represents the first phylogenetic
… -amplified 16S rRNA gene sequences to describe the different microbial communities. …
… -amplified 16S rRNA gene sequences to describe the different microbial communities. …
Phylogenetic analysis of the bacterial communities in marine sediments
JP Gray, RP Herwig - Applied and Environmental Microbiology, 1996 - Am Soc Microbiol
… phylogenetic analysis of microbial communities present in environmental samples microbial
… Eagle Harbor contained a phylogenetically diverse population of organisms from the Bacte- …
… Eagle Harbor contained a phylogenetically diverse population of organisms from the Bacte- …
Prokaryotic diversity, composition structure, and phylogenetic analysis of microbial communities in leachate sediment ecosystems
… This study focused on microbial communities inhabiting the … novel microbial lineages, special
metabolism, and community … DNA-based molecular phylogenetic approach was performed …
metabolism, and community … DNA-based molecular phylogenetic approach was performed …
Phylogenetic analysis and metabolic potential of microbial communities in an industrial bagasse collection site
P Kanokratana, W Mhuantong, T Laothanachareon… - Microbial ecology, 2013 - Springer
… In this study, microbial community structures at regions with varying microenvironmental …
Overall, remarkable differences in microbial community structures were found in aerobic surface …
Overall, remarkable differences in microbial community structures were found in aerobic surface …
UniFrac: a new phylogenetic method for comparing microbial communities
C Lozupone, R Knight - Applied and environmental microbiology, 2005 - Am Soc Microbiol
… differences between microbial communities based on phylogenetic information. This method,
UniFrac, measures the phylogenetic distance between sets of taxa in a phylogenetic tree …
UniFrac, measures the phylogenetic distance between sets of taxa in a phylogenetic tree …
Phylogenetic Analysis of Microbial Communities in Different Regions of the Gastrointestinal Tract in Panaque nigrolineatus, a Wood-Eating Fish
R McDonald, HJ Schreier, JEM Watts - PLoS One, 2012 - journals.plos.org
… an interesting model system for the detection of novel microbial catabolism. In this study, we
characterize the microbial community present in different regions of the alimentary tract of P. …
characterize the microbial community present in different regions of the alimentary tract of P. …
Quantitative phylogenetic assessment of microbial communities in diverse environments
… analyzed 31 protein-coding marker genes previously shown to provide sufficient information
for phylogenetic analysis … to an externally provided phylogeny of completely sequenced …
for phylogenetic analysis … to an externally provided phylogeny of completely sequenced …
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