Integrating transcriptome and metabolome reveals molecular networks involved in genetic and environmental variation in tobacco

P Liu, J Luo, Q Zheng, Q Chen, N Zhai, S Xu… - DNA …, 2020 - academic.oup.com
… layers of molecular data helps to discover and elucidate underlying molecular mechanisms
… and metabolomics data to identify molecular networks in response to cold stress in tobacco. …

Continuous‐cropping tobacco caused variance of chemical properties and structure of bacterial network in soils

S Chen, G Qi, T Luo, H Zhang, Q Jiang… - Land Degradation & …, 2018 - Wiley Online Library
… By analysis of soil microbial network, we can forecast the variation tendency of soil … then
the SRA matrix was submitted to Molecular Ecological Network Analysis Pipeline to construct …

Proteomics and co-expression network analysis reveal the importance of hub proteins and metabolic pathways in nicotine synthesis and accumulation in tobacco  …

Z Mo, L Duan, Y Pu, Z Tian, Y Ke, W Luo, K Pi… - Frontiers in Plant …, 2022 - frontiersin.org
… (A) The distribution of coefficient of variation (CV) of quality control samples. (… tobacco can
be useful in promoting the application of nicotine in other fields. In recent years, the molecular

Transcriptome-based gene regulatory network analyses of differential cold tolerance of two tobacco cultivars

Z Luo, Z Zhou, Y Li, S Tao, ZR Hu, JS Yang, X Cheng… - BMC Plant …, 2022 - Springer
… Gene expression change is one of adaptive molecular mechanisms for plants responding to
… We observed variations in GO terms among 10 subclusters (Additional file 1: Fig. S3). DEGs …

Molecular diversity, population structure, and linkage disequilibrium in a worldwide collection of tobacco (Nicotiana tabacum L.) germplasm

A Fricano, N Bakaher, MD Corvo, P Piffanelli, P Donini… - BMC genetics, 2012 - Springer
… Our PCoA results support the conclusion that the main tobacco types can be discriminated
by molecular fingerprinting. In this sense, genetic distance and model-based analyses …

Microbial network and composition changes according to tobacco varieties and interferes differently in black shank disease defense

B Li, G Qi, Y Li, X Zhao - Journal of Applied Microbiology, 2023 - academic.oup.com
… Rhizospheric soils were collected from tobacco plants of HB202 … and analysed with molecular
ecological network pipeline. The … The network of the HB202 was more complex and had …

Tobacco crop rotation enhances the stability and complexity of microbial networks

H Yan, S Wu, P Li, X Jin, D Shi, D Tu, W Zeng… - Frontiers in …, 2024 - frontiersin.org
tobacco soil, while only AP had a greater e ect on the community structure of protist. Molecular
ecological network … Our findings indicate significant variations in the relative abundance of …

Transcriptomic and metabolic regulatory network characterization of drought responses in tobacco

Z Hu, Z He, Y Li, Q Wang, P Yi, J Yang… - Frontiers in Plant …, 2023 - frontiersin.org
… transcriptional and metabolic network analyses of wild type tobacco and its derived mutant …
data, and construction of gene regulatory networks, we revealed that some key genes directly …

Navigating natural variation in herbivory-induced secondary metabolism in coyote tobacco populations using MS/MS structural analysis

D Li, IT Baldwin, E Gaquerel - Proceedings of the National …, 2015 - National Acad Sciences
… , natural variation) can be mapped onto MS/MS molecular networks. In this respect, our
study … previous work on molecular networks (22) and exemplifies how these networks can be …

Physiological, transcriptome and co-expression network analysis of chlorophyll-deficient mutants in flue-cured tobacco

Y Feng, Y Li, Y Zhao, H Shi - BMC Plant Biology, 2023 - Springer
… underlying leaf color variation. However, the physiological and molecular mechanism of
Chl biosynthesis and nitrate accumulation in Chl-deficient tobacco seedlings remains unclear. …