Unsupervised clustering of quantitative image phenotypes reveals breast cancer subtypes with distinct prognoses and molecular pathways

J Wu, Y Cui, X Sun, G Cao, B Li, DM Ikeda… - Clinical Cancer …, 2017 - AACR
… Using unsupervised consensus clustering of quantitative imaging phenotypes of the tumor
… show that imaging phenotypes may be used to infer dysregulated molecular pathways that …

Magnetic resonance image features identify glioblastoma phenotypic subtypes with distinct molecular pathway activities

H Itakura, AS Achrol, LA Mitchell, JJ Loya… - Science translational …, 2015 - science.org
… To map imaging subtypes to particular molecular signaling pathways, we performed SAM
on pathway activity estimates derived from the analysis of TCGA tumor CNV and gene …

Pathway reporter genes define molecular phenotypes of human cells

JD Zhang, E Küng, F Boess, U Certa, M Ebeling - BMC genomics, 2015 - Springer
… digital transcript imaging enables simultaneous monitoring of the entire pathway reporter
gene … We show that molecular phenotyping allows fast and accurate pathway delineation in …

Non–small cell lung cancer radiogenomics map identifies relationships between molecular and imaging phenotypes with prognostic implications

M Zhou, A Leung, S Echegaray, A Gentles, JB Shrager… - Radiology, 2018 - pubs.rsna.org
… samples, it is not always apparent from the imaging phenotype. … image phenotypes with
RNA signatures captured by metagenes and how they are associated with molecular pathways. …

Imaging-genomics reveals driving pathways of MRI derived volumetric tumor phenotype features in Glioblastoma

P Grossmann, DA Gutman, WD Dunn, CA Holder… - BMC cancer, 2016 - Springer
… drivers of these imaging phenotypes remain largely unknown. An Imaging-Genomics analysis
… MRI derived quantitative volumetric tumor phenotype features and molecular pathways. …

Identification of key processes underlying cancer phenotypes using biologic pathway analysis

S Efroni, CF Schaefer, KH Buetow - PloS one, 2007 - journals.plos.org
… , and distinguish phenotypes such as estrogen receptor status and p53 mutation state.
Pathways identified through this analysis perform as well or better than phenotypes used in the …

MinePath: mining for phenotype differential sub-paths in molecular pathways

L Koumakis, A Kanterakis, E Kartsaki… - PLoS computational …, 2016 - journals.plos.org
Pathway analysis methodologies couple traditional gene expression … molecular pathway
networks, offering a promising approach towards the biological interpretation of phenotype

Human-interpretable image features derived from densely mapped cancer pathology slides predict diverse molecular phenotypes

JA Diao, JK Wang, WF Chui, V Mountain… - Nature …, 2021 - nature.com
molecular phenotypes from whole-slide histopathology images using human-interpretable
image … that can exhaustively map whole-slide images at two and four micron-resolution. Cell- …

Data-Driven Radiogenomic Approach for Deciphering Molecular Mechanisms Underlying Imaging Phenotypes in Lung Adenocarcinoma: A Pilot Study

S Fischer, N Spath, M Hamed - International Journal of Molecular …, 2023 - mdpi.com
… research area called “molecular imaging”, “imaging genomics”, … molecular properties of
tumors and their imaging phenotypes. … significant correlations of molecular markers and clinical …

Genes and molecular pathways underpinning ciliopathies

JF Reiter, MR Leroux - Nature reviews Molecular cell biology, 2017 - nature.com
… -associated proteins and phenotypes has improved our knowledge of ciliary functions. In
particular, investigating ciliopathies has helped us to understand the molecular mechanisms by …