Molecular tools for exploring polyploid genomes in plants

R Aversano, MR Ercolano, I Caruso, C Fasano… - … journal of molecular …, 2012 - mdpi.com
polyploid genomes. After introducing some basic aspects on the origin and genetics of polyploids,
we highlight the main tools available for genome … of knowledge on polyploid formation, …

Recent progress and challenges in population genetics of polyploid organisms: an overview of current state‐of‐the‐art molecular and statistical tools

F Dufresne, M Stift, R Vergilino, BK Mable - Molecular ecology, 2014 - Wiley Online Library
… However, one of the most important challenges when working with polyploid genomes is the
difficulty of resolving the allelic constitution of individual loci (ie allelic dosage), which would …

[HTML][HTML] Current strategies of polyploid plant genome sequence assembly

M Kyriakidou, HH Tai, NL Anglin, D Ellis… - Frontiers in plant …, 2018 - frontiersin.org
… for the exploration of polyploid genomes. Here, we review the … of polyploid plant genomes,
and also present recent advances in genomic resources and functional tools in molecular

[HTML][HTML] Tools for genetic studies in experimental populations of polyploids

PM Bourke, RE Voorrips, RGF Visser… - Frontiers in plant …, 2018 - frontiersin.org
tools and techniques for molecular-genetic studies are specific to diploids. However, polyploid
… witnessing an explosion of interest in polyploid genomics. However, the critical issue of …

Application of molecular tools for study of the phytogeny of diploid and polyploid taxa in Triticeae

J Dvořák, HB Zhang - Hereditas, 1992 - Wiley Online Library
… To express quantitatively the relationship between a genome of a diploid with those of a
polyploid, repeated sequence correspondence (RSC) is calculated. It is a ratio of the number of …

Polyploidy and its effect on evolutionary success: old questions revisited with new tools

A Madlung - Heredity, 2013 - nature.com
… which polyploids will persevere in evolution, and for which polyploids genome duplication
… Likewise, and very importantly, we still cannot infer from the integration of the molecular and …

Sequencing and assembly of polyploid genomes

Y Wang, J Yu, M Jiang, W Lei, X Zhang… - Polyploidy: Methods and …, 2023 - Springer
… SNP differences that exist on separate DNA molecules to help better phase polyploid genomes.
… Furthermore, we compiled a list of polyploid genome assembly tools suitable for various …

[PDF][PDF] Single nucleotide polymorphism identification in polyploids: a review, example, and recommendations

J Clevenger, C Chavarro, SA Pearl, P Ozias-Akins… - Molecular plant, 2015 - cell.com
… Although single nucleotide polymorphisms (SNPs) have become popular tools for genetic …
the study of polyploid genomes, which tend to be larger than diploid genomes and require an …

Alignment‐free methods for polyploid genomes: quick and reliable genetic distance estimation

A VanWallendael, M Alvarez - Molecular ecology resources, 2022 - Wiley Online Library
… bioinformatic tools require biallelic SNPs, so polyploidtools that accommodate polyploids.
Solutions are being continuously developed to overcome the challenges of polyploid genome

Polyploidy and crop improvement

JA Udall, JF Wendel - Crop Science, 2006 - Wiley Online Library
… All crop plants are polyploid and some genomes have been duplicated more recently than
others. Advancements in cytogenetic and molecular tools, including high-density genetic …