A diffusion MRI tractography connectome of the mouse brain and comparison with neuronal tracer data

E Calabrese, A Badea, G Cofer, Y Qi… - Cerebral …, 2015 - academic.oup.com
diffusion tractography connectome of the mouse brain at microscopic resolution, and a
brain-wide comparison of tractography data … The tractography-based connectome has several …

Comparative mouse brain tractography of diffusion magnetic resonance imaging

RX Moldrich, K Pannek, R Hoch, JL Rubenstein… - Neuroimage, 2010 - Elsevier
… how different tractography approaches can impact on dMRI assessment of tract changes in
a mouse … In conclusion, probabilistic tractography can elucidate the phenotypes of mice with …

In vivo diffusion tensor magnetic resonance imaging and fiber tracking of the mouse brain

LA Harsan, D Paul, S Schnell, BW Kreher… - NMR in …, 2010 - Wiley Online Library
brain was used in the present study to describe major white matter fiber tracts of the mouse
brain … no data about the probabilistic tractography of the rodent brain were reported so far. …

Mapping remodeling of thalamocortical projections in the living reeler mouse brain by diffusion tractography

LA Harsan, C Dávid, M Reisert… - Proceedings of the …, 2013 - National Acad Sciences
… and mapping of the living mouse brain, both in normal and pathological conditions. Different
from any previous approach comparing diffusion tractography data and histological tract …

Optimization of large-scale mouse brain connectome via joint evaluation of DTI and neuron tracing data

H Chen, T Liu, Y Zhao, T Zhang, Y Li, M Li, H Zhang… - Neuroimage, 2015 - Elsevier
Tractography based on diffusion tensor imaging (DTI) data has been used as a tool by a …
number of ongoing brain connectome-related studies based on DTI tractography, we believe …

Diffusion tensor brain imaging and tractography

R Ito, S Mori, ER Melhem - Neuroimaging Clinics, 2002 - neuroimaging.theclinics.com
… of white-matter disease by quantitative maps and tractography, and some of the challenges
of characterizing developmental morphologic changes in mouse brain by DT MR imaging. …

Whole mouse brain connectomics

G Allan Johnson, N Wang, RJ Anderson… - Journal of …, 2019 - Wiley Online Library
… The development of diffusion magnetic resonance imaging (dMRI), tractography, and MR
connectomics have spawned an enormous number of technical developments, applications, …

[HTML][HTML] The role of spatial embedding in mouse brain networks constructed from diffusion tractography and tracer injections

S Trinkle, S Foxley, G Wildenberg, N Kasthuri… - Neuroimage, 2021 - Elsevier
… embedding to brain topology. In this work, we compare graphs constructed with ex vivo
tractography data in mice and neural tracer data from the Allen Mouse Brain Connectivity Atlas to …

[HTML][HTML] Using mesoscopic tract-tracing data to guide the estimation of fiber orientation distributions in the mouse brain from diffusion MRI

Z Liang, TM Arefin, CH Lee, J Zhang - Neuroimage, 2023 - Elsevier
… DL-TOD based tractography in the mouse brain We then examined whether DL-TOD was
able to improve tractography in the mouse brain. As explained in Section 3.1, the aggregated …

[HTML][HTML] Towards reliable reconstruction of the mouse brain corticothalamic connectivity using diffusion MRI

TM Arefin, CH Lee, Z Liang, H Rallapalli, YZ Wadghiri… - NeuroImage, 2023 - Elsevier
… Our results suggest that these parameters significantly affect tractography outcomes and our
… connectivity in the mouse brain. Furthermore, tractography in mouse brain gray matter still …