… and barstar, as these two proteins provide a very well characterized example of a pair of …
an encounter complex in the Patch model, a rotation of up to 3∞ in two angles from their values …

… We report two recent analyses; from the prediction of RBDs in sequences to the … Protein
interaction sites are critical domains for selective recognition of molecules and for the formation …

… Such was the similarity between the two interacting patch types, we were able to use obligate
binding site properties to predict the location of non-obligate binding sites and vice versa. …

… Multiple levels of coarse-graining are now available and CG models of … This study provides
insights into the driving forces for protein–protein recognition. Modelling of actin filaments …

… If we consider amino acid compositions of two samples of interaction sites P and Q to be
generated independently, each by a separate stochastic process according to probability …

… , interaction between two proteins … of proteins participating in multiple functional PPIs evolve
under a peculiar physical constraint: Such proteins have to evolve hydrophobic interacting …

… recognition that a few amino acids – so-called hotspots – may contribute the majority of
interaction… This review focuses on two aspects of targeting PPIs. The first concerns current …

… the identification of novel … -interacting pairs composed of artificial protein sequences. It has
been demonstrated that if a sequence of one interacting pair is shuffled, then the two proteins …

… represent recognition in terms of two complementary molecular surfaces, we encode both …
learn to simultaneously segment two point clouds into interacting and non-interacting regions. …

… To enable the robust identification of a diverse set of homologues, the protomer should be …
these two regions and how much of each a patch can reasonably cover, ie, most patches that …