Causes and consequences of purifying selection on SARS-CoV-2
… In SARS-CoV-2, we find evidence for common intrahost purifying … Indeed, the volume of
genome data for SARS-CoV-2 allows an … Similarly, mutational scanning experiments indicate …
genome data for SARS-CoV-2 allows an … Similarly, mutational scanning experiments indicate …
[HTML][HTML] Mutational landscape and in silico structure models of SARS-CoV-2 spike receptor binding domain reveal key molecular determinants for virus-host …
… of RBM mutations on each of the binding clusters in SARS-CoV-2 by using two in silico
approaches: structural modelling and mutagenesis (Fig. 3B, C and Additional File 1: Table S1). …
approaches: structural modelling and mutagenesis (Fig. 3B, C and Additional File 1: Table S1). …
… and allosteric propensities of the SARS-CoV-2 spike protein with different classes of antibodies: mutational and perturbation-based scanning reveals the allosteric …
G Verkhivker, S Agajanian, D Oztas… - Journal of chemical …, 2021 - ACS Publications
… and perturbation-response scanning of the SARS-CoV-2 spike … We suggest that the
SARS-CoV-2 S protein may exploit the … mutagenesis have quantified binding mechanisms of …
SARS-CoV-2 S protein may exploit the … mutagenesis have quantified binding mechanisms of …
In silico Antibody Mutagenesis for Optimizing its Binding to the Spike Protein of SARS-CoV-2
… as indicated in the alanine scan. When mutating G26 into … zero or even negative from the
alanine scan (Fig. 2e) should be … FEP calculations for alanine scan and enumerated mutations, …
alanine scan (Fig. 2e) should be … FEP calculations for alanine scan and enumerated mutations, …
Mammalian cell surface display system for conformational epitope determination of SARS-CoV-2 neutralizing antibodies
N Thalén, M Lundqvist, H Persson, C Hofström… - 2021 - diva-portal.org
… Alanine scanning mutagenesis on SARS-CoV-2-RBD showed a defined epitope for the
CR3022 antibody. All sites that emerged from the scanning mutagenesis aligned within close …
CR3022 antibody. All sites that emerged from the scanning mutagenesis aligned within close …
[HTML][HTML] Molecular rationale for SARS-CoV-2 spike circulating mutations able to escape bamlanivimab and etesevimab monoclonal antibodies
… Binding energy change (ΔΔG = ΔG WILD-TYPE – ΔG ALA ) obtained from the computational
alanine-scanning (CAS) mutagenesis for the S-RBD CoV‑2 residues at the binding …
alanine-scanning (CAS) mutagenesis for the S-RBD CoV‑2 residues at the binding …
[HTML][HTML] Programmed ribosomal frameshifting in decoding the SARS-CoV genome
PV Baranov, CM Henderson, CB Anderson… - Virology, 2005 - Elsevier
… in SARS-CoV has been characterized in cultured mammalian cells using a dual luciferase
reporter system and mass spectrometry. Mutagenic analysis of the SARS-CoV … was scanned …
reporter system and mass spectrometry. Mutagenic analysis of the SARS-CoV … was scanned …
Multivalent designed proteins neutralize SARS-CoV-2 variants of concern and confer protection against infection in mice
… To determine the potential for mutations to arise that disrupt LCB1 and AHB2 binding to the
RBD, we performed deep mutational scans using site saturation mutagenesis of the RBD (38)…
RBD, we performed deep mutational scans using site saturation mutagenesis of the RBD (38)…
Severe acute respiratory syndrome Coronavirus-2 GenoAnalyzer and mutagenic anomaly detector using FCMFI and NSCE
… A summary of data on SARS CoV-2 mutations worldwide from December 2019 to June …
easier by cutting-edge technology like alanine scanning and machine learning. DeepNEU, a type …
easier by cutting-edge technology like alanine scanning and machine learning. DeepNEU, a type …
The functional landscape of SARS-CoV-2 3CL protease
… scanning approach to systematically profile the activity of all possible single mutants of the
SARS-CoV-… In general, the structural insights support the results from our mutagenesis study, …
SARS-CoV-… In general, the structural insights support the results from our mutagenesis study, …