Natural pathways to polyploidy in plants and consequences for genome reorganization

A Tayalé, C Parisod - Cytogenetic and genome research, 2013 - karger.com
… evolutionary process that triggers drastic genome reorganization, but much remains to be …
pathways leading to different types of polyploids and patterns of polyploidy-induced genome

Natural selection on gene order in the genome reorganization process after whole-genome duplication of yeast

RP Sugino, H Innan - Molecular biology and evolution, 2012 - academic.oup.com
… To explore the action of selection on gene order in the post-WGD genome reorganization
of physically adjacent gene pairs in the genome. All adjacent gene pairs in the genome were …

Natural Pathways towards Polyploidy in Animals: The Squalius alburnoides Fish Complex as a Model System to Study Genome Size and Genome Reorganization in …

MJ Collares-Pereira, I Matos… - … and genome research, 2013 - karger.com
genome regulation and interaction in diploid and triploid individuals. In fact, the ongoing
process of genome reorganization in this genomic … of reticulation with genome tetraploidization […

Complex reorganization and predominant non-homologous repair following chromosomal breakage in karyotypically balanced germline rearrangements and …

C Chiang, JC Jacobsen, C Ernst, C Hanscom… - Nature …, 2012 - nature.com
… , remarkably complex genomic reorganization can also occur … , we found that similar genomic
reorganization can result from … results reveal substantial chromosomal reorganization in the …

Transcription factors orchestrate dynamic interplay between genome topology and gene regulation during cell reprogramming

R Stadhouders, E Vidal, F Serra, B Di Stefano… - Nature …, 2018 - nature.com
… integrate time-resolved changes in genome topology with gene expression, TF binding
and … genome reorganization at multiple architectural levels, often before changes in gene

Insights into the cell fate decision-making processes from chromosome structural reorganizations

X Chu, J Wang - Biophysics Reviews, 2022 - pubs.aip.org
… of gene expression, the irreversibility in the chromosome structural reorganization pathways
may suggest distinct gene … model, reflecting the nonequilibrium nature of the cell-state …

The genome‐centric concept: resynthesis of evolutionary theory

HHQ Heng - Bioessays, 2009 - Wiley Online Library
… would not be able to explain specific genome alterations occurring during natural evolution.
… The shattering genome model emphasizes the importance of genome reorganization as …

Global coordination in adaptation to gene rewiring

Y Murakami, Y Matsumoto, S Tsuru… - Nucleic acids …, 2015 - academic.oup.com
… rewiring is a common evolutionary phenomenon in nature that may lead to … gene itself was
insufficient to reach a successful cell fate, but the coordinated reorganization of global gene

Dynamic 3D genome reorganization during senescence: defining cell states through chromatin

HA Shaban, SM Gasser - Cell Death & Differentiation, 2023 - nature.com
genome reorganization to the altered gene expression patterns. It remains to be seen how
chromatin reorganizes globally with respect to the transcriptome during both entry into and …

Parallel evolution of transcriptome architecture during genome reorganization

SH Yoon, DJ Reiss, JC Bare, D Tenenbaum… - Genome …, 2011 - genome.cshlp.org
… in natural habitats undergo constant reorganization of their … We demonstrate that genomic
reorganization is coupled to … genes into the existing gene regulatory program. Remarkably, …