… ligandome, the reliability of new predictors on these epitopes has yet … MHC-binding predictors
by using newly available, untested data of both synthetic and naturally processed epitopes…

… Areas covered: For this, we first analyzed naturally processed peptide (NP) … peptides were
also reported to be T cell epitopes. Thus, the NP data identify only a small subset of epitopes …

… We present MHC-NP, a tool for predicting peptides naturally processed by the MHC pathway…
Our tool is freely available online and hosted by the Immune Epitope Database at http://tools.…

… identified in naturally processed MHC-associated peptides, the relationship of PTMs to antigen
… involving disulfide bond formation within naturally processed MHC associated peptides. …

… MHC class II ligands. There is evidence that addition of C-terminal basic PFRs to known
peptide epitopes is able to enhance both processing … epitope identification and vaccine design. …

… epitope HIVenv,,,-,,, (26), and the HLA-A1 restricted peptide epitope Mage-1 … In the current
study, the relative affinities of naturally processed peptides for the class I MHC molecule HLA-…

… MHC Class I-Restricted Antigen Processing 115 of naturally processed T cell epitopes is to
compare them with synthetic peptides, which is possible if the protein of origin is known. For …

… of the complexity of naturally processed peptides associated with MHC molecules. Greater
… An important extension of this work is the identification of MHC-restricted peptide epitopes …

… of peptide to MHC-II binding trained with naturally … a naturally processed ligand, we can
assume that the sequence of the validated epitope and the original (but unknown to us) naturally …

… 788) as a helper epitope and the identification of its potential promiscuity (broad MHC restriction),
so as … We report here that HER2(776–788) is a helper peptide naturally processed and …