Maize network analysis revealed gene modules involved in development, nutrients utilization, metabolism, and stress response

S Ma, Z Ding, P Li - BMC plant biology, 2017 - Springer
… The modules identified in our network analysis covered many aspects of maize biology.
Compared to a previously published maize transcriptional network that contained 49 modules [6]…

Investigation and development of maize fused network analysis with multi-omics

J Jiang, F Xing, C Wang, X Zeng, Q Zou - Plant Physiology and …, 2019 - Elsevier
… influence the yield of maize. In this paper, we use multi-omics data to construct … networks
separately and integrated into one final fused network to provide insight into maize development

Genome-wide identification, expression profiling, and network analysis of AT-hook gene family in maize

EH Bishop, R Kumar, F Luo, C Saski, RS Sekhon - Genomics, 2020 - Elsevier
analysis suggests novel role of AHLs in maize compared to those reported on other species
and warrants further functional analysis… of these genes in maize development, we examined …

QTL mapping for maize starch content and candidate gene prediction combined with co-expression network analysis

F Lin, L Zhou, B He, X Zhang, H Dai, Y Qian… - Theoretical and Applied …, 2019 - Springer
… For co-expression network analysis, the RNA-seq data of maize whole seeds of B73 and
Mo17 with six developmental stages, including 12, 16, 20, 24, 30, and 36 days after pollination, …

A spatiotemporal transcriptomic network dynamically modulates stalk development in maize

L Le, W Guo, D Du, X Zhang, W Wang… - Plant Biotechnology …, 2022 - Wiley Online Library
… gene coexpression network analysis, we … maize stalk development, we performed correlation
analysis (Figure S1b), hierarchical clustering (Figure 1b), and principal component analysis

… transcriptome and weighted gene co-expression network analyses reveal hybrid-specific modules and candidate genes related to plant height development in maize

H Wang, L Gu, X Zhang, M Liu, H Jiang, R Cai… - Plant molecular …, 2018 - Springer
… Furthermore, weighted gene co-expression network analysis was explored to find key hub
genes involved in plant height regulation. Hundreds of candidate genes, encoding various …

Combining quantitative genetics approaches with regulatory network analysis to dissect the complex metabolism of the maize kernel

W Wen, H Liu, Y Zhou, M Jin, N Yang, D Li… - Plant …, 2016 - academic.oup.com
… of the genes in the primary network. This result of the network analysis, which is based on
… Combing quantitative genetics approaches and transcriptional network analysis, as shown …

Co-expression network analysis of duplicate genes in maize (Zea mays L.) reveals no subgenome bias

L Li, R Briskine, R Schaefer, PS Schnable, CL Myers… - BMC genomics, 2016 - Springer
… Our work provides a comprehensive analysis of maize co-expression network divergence
for three different types of gene duplications and identifies potential relationships between …

Deciphering transcriptional mechanisms of maize internodal elongation by regulatory network analysis

Z Ren, Y Liu, L Li, X Wang, Y Zhou… - Journal of …, 2023 - academic.oup.com
… for lodging resistance of maize (Zea mays). In … maize internode development, with potential
use for targeted genetic control of internode length to improve the lodging resistance of maize

Highly interwoven communities of a gene regulatory network unveil topologically important genes for maize seed development

W Xiong, C Wang, X Zhang, Q Yang, R Shao… - The Plant …, 2017 - Wiley Online Library
… Our network analysis provides 33 potential ‘partner’ TFs that PBF1 may have recruited,
including OPAQUE2 that also directly regulates zein genes, and two unknown TFs (…