The complete mitochondrial genome of Taxus cuspidata (Taxaceae): eight protein-coding genes have transferred to the nuclear genome

SL Kan, TT Shen, P Gong, JH Ran, XQ Wang - BMC Evolutionary Biology, 2020 - Springer
Background Gymnosperms represent five of the six lineages of seed plants. However, most
sequenced plant mitochondrial genomes (mitogenomes) have been generated for …

Genome‐wide survey of nuclear proteincoding markers for beetle phylogenetics and their application in resolving both deep and shallow‐level divergences

LH Che, SQ Zhang, Y Li, D Liang… - Molecular Ecology …, 2017 - Wiley Online Library
genome data of beetles and other related insect species, we performed a genome-wide survey
to search nuclear protein-coding (NPC) … from standard genomic DNA extracts. These new …

Arthropod relationships revealed by phylogenomic analysis of nuclear protein-coding sequences

JC Regier, JW Shultz, A Zwick, A Hussey, B Ball… - Nature, 2010 - nature.com
nuclear ribosomal DNA and mitochondrial sequences. Our data come from the complementary
DNA of single-copy nuclear protein-coding … of single-copy nuclear genes in the past year …

Protection of the genome and central protein-coding sequences by non-coding DNA against DNA damage from radiation

GH Qiu - Mutation Research/Reviews in Mutation Research, 2015 - Elsevier
… the genome and central protein-coding sequences are doubly protected by non-coding DNA
in … , it has been shown that more DSBs resulting from IR have been detected in the nuclear

Non-coding RNAs: lessons from the small nuclear and small nucleolar RNAs

AG Matera, RM Terns, MP Terns - Nature reviews Molecular cell biology, 2007 - nature.com
… that genomes in all three domains of life produce functional RNAs that do not encode proteins
(non-coding (… Most ncRNAs function with essential partner proteins (that is, as non-coding

Nuclear organization and genome function

K Van Bortle, VG Corces - Annual review of cell and …, 2012 - annualreviews.org
… long-range interactions and have proposed roles in nuclear organization. In this review, we
proteins and provide an integrative model for the roles of insulators in nuclear organization. …

PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions

MF Lin, I Jungreis, M Kellis - Bioinformatics, 2011 - academic.oup.com
genomic regions as protein coding or non-coding. We present PhyloCSF, a novel comparative
genomics … it is likely to represent a conserved protein-coding region, based on a formal …

Identification of 104 rapidly-evolving nuclear protein-coding markers for amplification across scaled reptiles using genomic resources

DM Portik, PL Wood, JL Grismer, EL Stanley… - Conservation Genetics …, 2012 - Springer
nuclear markers from existing genomic resources and present 104 rapidly-evolving NPCL
designed primarily for squamates using the Anolis and Gallus genomes… Gallus genome using …

[DOC][DOC] Eukaryotic genome complexity

L Pray - Nature Education, 2008 - cdn.worldcolleges.info
genomes than protein-coding genes alone. Consider these fundamental facts about the
eukaryotic nuclear genome… of protein-coding genes of any eukaryotic genome sequenced to date…

The relationship between non‐proteincoding DNA and eukaryotic complexity

RJ Taft, M Pheasant, JS Mattick - Bioessays, 2007 - Wiley Online Library
… , as the extent of protein coding sequence remains relatively … genomes that the relative
amount of non-protein-coding … terms ‘genome size’ and ‘Cvalue’ to describe nuclear DNA …