Haplotype-based phylogenetic analysis and population genomics uncover the origin and domestication of sweetpotato

M Yan, M Li, Y Wang, X Wang, MH Moeinzadeh… - Molecular Plant, 2024 - cell.com
… its genetic origin remains controversial, and its domestication … haplotype-based phylogenetic
analysis to identify two probable … Sweetpotato most likely originated from reciprocal crosses …

Phylogenetic analysis of 47 chloroplast genomes clarifies the contribution of wild species to the domesticated apple maternal line

SV Nikiforova, D Cavalieri, R Velasco… - … biology and evolution, 2013 - academic.oup.com
… Both the origin of domesticated apple and the overall phylogeny of the genus Malus are still
not completely resolved. Having this as a target, we built a 134,553-position-long alignment …

Phylogenetic analysis of the rDNA intergenic spacer subrepeats and its implication for the domestication history of foxtail millet, Setaria italica

K Fukunaga, K Ichitani, M Kawase - Theoretical and Applied Genetics, 2006 - Springer
… The geographical origin of foxtail millet remains a … The geographical origin of domesticated
ssp. italica cannot be … have advanced monophyletic and polyphyletic origins. Vavilov (1926) …

A phylogenetic analysis based on nucleotide sequence of a marker linked to the brittle rachis locus indicates a diphyletic origin of barley

P Azhaguvel, T Komatsuda - Annals of Botany, 2007 - academic.oup.com
… This marker thus provides a legitimate handle for inferring the history of barley domestication.
Phylogenetic analysis based on the marker sequence separates the E- from the W-type …

Origin and phylogenetic analysis of Tibetan Mastiff based on the mitochondrial DNA sequence

Q Li, Z Liu, Y Li, X Zhao, L Dong, Z Pan, Y Sun… - Journal of Genetics and …, 2008 - Elsevier
… and the earliest domestication time was about 40,000 to 50,000 YBP, and they concluded
that the origin of domestic dogs resulted from taming in different areas and at different times. …

Origin and domestication of Cucurbitaceae crops: insights from phylogenies, genomics and archaeology

G Chomicki, H Schaefer, SS Renner - New Phytologist, 2020 - Wiley Online Library
… A more recent phylogenetic analysis of a denser sample of archaeological wild and cultivated
American and Asian bottle gourds indicated that the species was brought from Africa to …

Molecular evolution and phylogenetic analysis of genes related to cotton fibers development from wild and domesticated cotton species in Gossypium

H Zhu, J Lv, L Zhao, X Tong, B Zhou, T Zhang… - Molecular phylogenetics …, 2012 - Elsevier
domestication of both diploid and tetraploid cotton species was carried out for fiber utilization.
To understand the origin and domestication … Their structures, phylogenetic relationship and …

Multiple Origin but Single Domestication Led to Oryza sativa

JY Choi, MD Purugganan - G3: Genes, Genomes, Genetics, 2018 - academic.oup.com
… We suggest that the analysis of false-positive selective sweep regions and phylogenetic
analysis of … In the end, our result indicates that Asian rice originated from multiple wild progenitor …

Origin, phylogeny, domestication and spread.

JI Cubero, M Perez De La Vega… - The lentil: botany …, 2009 - cabidigitallibrary.org
This chapter describes the history, taxonomy (morphological and molecular), centre of origin,
spread of culture, and evolution of the cultivated forms of lentil. Lentils were domesticated, …

Population phylogenomic analysis of mitochondrial DNA in wild boars and domestic pigs revealed multiple domestication events in East Asia

GS Wu, YG Yao, KX Qu, ZL Ding, H Li… - Genome biology, 2007 - Springer
… to discern the origin of domestic pigs. Our findings show that pig domestication in East Asia
… A preliminary phylogenetic analysis of the 119 haplotypes of these D-loop sequences was …