Comparative Genomics of the Bacterial Genus Streptococcus Illuminates Evolutionary Implications of Species Groups
… For pan-genome analysis starting from one single genome to 138 genomes, genomes
were added 1000 times in a randomized order without replacement at each fixed number of …
were added 1000 times in a randomized order without replacement at each fixed number of …
Genomic Features and Comparative Genomic Analysis of Streptococcus sp. v1. nov., Isolated from an Endophthalmitis Patient
M Zheng, Y Kang, Y Shen, Y Xu, F Xu, Y Chen - Current Microbiology, 2023 - Springer
… The Core–pan-genome analysis was done using the Bacterial Pan Genome Analysis (BPGA) …
For variation analysis, we used Streptococcus mitis SK321 as the reference strain. Single …
For variation analysis, we used Streptococcus mitis SK321 as the reference strain. Single …
Similar genomic patterns of clinical infective endocarditis and oral isolates of Streptococcus sanguinis and Streptococcus gordonii
KH Iversen, LH Rasmussen, K Al-Nakeeb… - Scientific Reports, 2020 - nature.com
… Therefore, the size of the pan-genome is … Mitis group streptococci clinical isolates from
six different species, where 591 core-genes were identified 48 . By investigating the pan-genome …
six different species, where 591 core-genes were identified 48 . By investigating the pan-genome …
Analysis of Streptococcus agalactiae pan-genome for prevalence, diversity and functionality of integrative and conjugative or mobilizable elements integrated in the …
… Search of genomic islands integrated in the tRNA Lys CTT gene in the pan-genome of S. …
in Streptococcus agalactiae Many tandems of elements were detected during this analysis …
in Streptococcus agalactiae Many tandems of elements were detected during this analysis …
… analyses, and proposed reclassification of Streptococcus dentisani as Streptococcus oralis subsp. dentisani comb. nov., Streptococcus tigurinus as Streptococcus …
… Mitis group of the genus streptococci using 195 available genomes in a comparative phylogenetic
analysis … (ANI) and in silico and in vitro analyses of specific phenotypic characteristics. …
analysis … (ANI) and in silico and in vitro analyses of specific phenotypic characteristics. …
[PDF][PDF] Similar genomic patterns of clinical infective endocarditis and oral isolates of Streptococcus sanguinis and Streptococcus gordonii
JJA Armenteros, CS Jensen, R Dargis - core.ac.uk
… study of 80 Mitis group streptococci clinical isolates from six … By investigating the pan-genome
we hoped to identify genes … of streptococcus oralis and Streptococcus mitis isolated from …
we hoped to identify genes … of streptococcus oralis and Streptococcus mitis isolated from …
Pan-genomics of veterinary pathogens and its applications
… Pan-genome is an approach that contributes to the research of … Streptococcus agalactiae,
by the researcher Tettelin and collaborators [1]. In this work, they define the pan-genome as a …
by the researcher Tettelin and collaborators [1]. In this work, they define the pan-genome as a …
Relationships among streptococci from the mitis group, misidentified as Streptococcus pneumoniae
E Sadowy, A Bojarska, A Kuch, A Skoczyńska… - European Journal of …, 2020 - Springer
… (rMLST) scheme and core-genome analysis, clearly separated investigated isolates from S.
… streptococci, associated with the Streptococcus pseudopneumoniae and Streptococcus mitis …
… streptococci, associated with the Streptococcus pseudopneumoniae and Streptococcus mitis …
Population genomics of an accidental pathogen Streptococcus mitis from patients with bloodstream infection and infective endocarditis in the UK and Ireland
A Kalizang'oma, D Richard, B Kwambana-Adams… - 2023 - researchsquare.com
… analyses to assess the abundance of all the functionally characterised (or known) and
hypothetical genes in the S. mitis pangenome … inferred from pan-genome clustering analysis using …
hypothetical genes in the S. mitis pangenome … inferred from pan-genome clustering analysis using …
Comparative genomic analysis of the emerging pathogen Streptococcus pseudopneumoniae: novel insights into virulence determinants and identification of a novel …
G Garriss, P Nannapaneni, AS Simões, S Browall… - BioRxiv, 2018 - biorxiv.org
… We defined the pan-genome of these two species using the 44 S. pseudopneumoniae
genomes and 39 completed and fully-annotated S. pneumoniae NCBI genomes (Table S3). …
genomes and 39 completed and fully-annotated S. pneumoniae NCBI genomes (Table S3). …