… The advent of next-generation sequencing (NGS) coupled with the heritability of SNPs make
them ideal markers for genetic analysis of human, animal, and microbial data. SNPs have …

… However, 263 accessory genes, identified using the reference pan-genome approach in
this study, are absent in C. jejuni 11168 but present in the ST-45 complex. Amongst this …

… identify unique genomic markers, using pangenome analyses, … gene markers for S.
pneumoniae and S. pseudopneumoniae. The species-dependent presence of these unique markers …

… the pan-genome among a group of sequences, and the SuperPhy platform, which utilizes this
pan-genome … In this study, we examined the pan-genome of 4893 genomes of Salmonella …

… use of pangenomes and novel markers including structural … Pangenomes and SVs are now
available in humans, livestock, … of pangenomes using the above three approaches started …

… approaches for pangenome assembly, analysis and visualisation. In addition, we consider
the potential of pangenomes … molecular genetic markers such as SNPs, and the application of …

… these strains through pangenomics analysis and also proposed new gene markers which
may … Both approaches conciliated an open pangenome structure for the genus Acinetobacter. …

… gene clusters in the pan-genome. This pipeline is coupled to a powerful yet easy-to-use
web-based visualization for interactive exploration of the pan-genome. The … A common approach …

… a pan-genome analysis … Pan-genome analysis revealed that 2,631 orthologue genes are
only shared by Fusarium spp., and on average 3,941 (SD ± 1,418.6) are species-specific genes…

… gene-oriented approaches for characterizing pangenomes and compare them on the ability
to correctly identify gene … We use the term gene-oriented since we focus on approaches that …