… Moreover, focus on specific types of peptide interactions (PDZ domains, SH3 domains) has
… content of structural databases. Grouping of 3D structures of protein–peptide complexes into …

… peptide–protein complex structures by only keeping the peptide and its interacting protein
chains, where a peptide … normal peptides, we only chose those complexes including peptides …

… PixelDB is a database of high-quality protein–peptide complex structures that we designed
… in peptide binding. Compared to complexes in other such compendia, PixelDB peptide …

… Based on a newly constructed structural database of 89 nonredundant protein–peptide … ,
MDockPeP2, for protein–peptide complex structure prediction by combining physicochemical …

… with small peptides. As the number of new and interesting protein–peptide complex structures
continue to expand, our understanding of these protein–peptide recognition events should …

… in free peptide structures in Cambridge structural database ( CSD ) with identical residues
in PDB complexes, suggests that the information can be integrated from both the structural …

… groups according to their structural type: linear, … peptides that show a complex structure
with several overlapping cycles and branches. The number of monomers composing the peptide …

… of one prototypical peptide ligand, called seed ligands, for each receptor along with the PDB
ID of the corresponding receptor–peptide complex and chain ID of the peptide ligand inside …

… developed a hand-curated structural database (2P2Idb) by … protein–inhibitor complexes
have been structurally characterized, … modified peptides such as staple peptides or with peptide …

… -built database to match spectra with cross-linked peptides, … We show that our analysis
sheds light on critical structural … coiled coils of the NDC80 complex, and the organization of a …