Permeation process of small molecules across lipid membranes studied by molecular dynamics simulations

SJ Marrink, HJC Berendsen - The Journal of Physical Chemistry, 1996 - ACS Publications
… Whether a similar permeation process also describes the permeation of other small molecules
… which accounts for the observed relatively high permeability rates of smaller molecules. …

Intrinsic membrane permeability to small molecules

C Hannesschlaeger, A Horner, P Pohl - Chemical reviews, 2019 - ACS Publications
permeation models on the example of the permeation of water and other small molecules
in … by the observation that the permeation of very small molecules was not well described by …

[HTML][HTML] Subdiffusion in membrane permeation of small molecules

C Chipot, J Comer - Scientific Reports, 2016 - nature.com
permeation of a small molecule that does … permeation dynamics for molecules such as
methanol, which exhibit subdiffusive behavior on the characteristic timescales of their permeation. …

Permeation of small molecules through a lipid bilayer: a computer simulation study

D Bemporad, JW Essex, C Luttmann - The Journal of Physical …, 2004 - ACS Publications
… , especially when studying solute permeation, are therefore … simulations to study small
molecule permeation through a DPPC … of the passive permeation process at a molecular level. …

Simulating the free energy of passive membrane permeation for small molecules

BL Lee, K Kuczera - Molecular Simulation, 2018 - Taylor & Francis
… the atomistic and molecular properties of membrane structure, dynamics and permeation.
Our review focuses on simulations analysing permeation of small molecules through lipid …

Determining small-molecule permeation through lipid membranes

J Frallicciardi, M Gabba, B Poolman - Nature protocols, 2022 - nature.com
… determination of permeability coefficients of small molecules in lipid vesicles and living cells.
… The protocol for measuring small-molecule permeation in vesicles is also readily combined …

Permeation dynamics of small molecules through silica membranes: molecular dynamics study

H Takaba, K Mizukami, M Kubo, A Fahmi… - AIChE …, 1998 - Wiley Online Library
… an atomistic description of the permeation process and can help in … Molecular dynamics
(MD) methods allow the description of the dynamics behavior of the permeated molecules

Permeation of small molecules through polymers confined in mesoporous media

PS Rallabandi, DM Ford - Journal of Membrane Science, 2000 - Elsevier
… Both local packing and rigidity of the matrix affect the permeation of small molecules in …
Later we focus on the effects of these features on the permeation of the penetrant molecules

Permeability of small molecules through a lipid bilayer: a multiscale simulation study

M Orsi, WE Sanderson, JW Essex - The Journal of Physical …, 2009 - ACS Publications
… (for example, the solutes in membrane permeation studies) are modeled atomistically, while
… None of these techniques has been used to simulate transmembrane permeation processes

Getting across the cell membrane: an overview for small molecules, peptides, and proteins

NJ Yang, MJ Hinner - Site-Specific Protein Labeling: Methods and …, 2015 - Springer
… drugs are small molecules acting on … of molecules—namely, small molecules, peptides,
and proteins—are thought to cross the mammalian plasma membrane, how such permeation