The causes of evolvability and their evolution

JL Payne, A Wagner - Nature Reviews Genetics, 2019 - nature.com
… fundamental: evolvability is the ability of a biological system to produce phenotypic variation
that is … , synergistic epistasis is also used to describe negative epistasis among deleterious …

An evolutionary perspective on epistasis and the missing heritability

G Hemani, S Knott, C Haley - PLoS genetics, 2013 - journals.plos.org
… two-locus patterns; Figure S1) and assuming that the phenotype had a direct effect on fitness
we calculated their expected allele frequency trajectories over time. With these outcomes …

Genotype networks of 80 quantitative Arabidopsis thaliana phenotypes reveal phenotypic evolvability despite pervasive epistasis

G Schweizer, A Wagner - PLoS computational biology, 2020 - journals.plos.org
… We report pervasive epistasis in these genotype networks. Even though such epistasis can
… study the influence of epistasis on the evolvability of whole-organism phenotypes, we chose P…

Epistasis in protein evolution

TN Starr, JW Thornton - Protein science, 2016 - Wiley Online Library
pervasive epistasis in which the physical and biological effects of mutations change over
the course of evolution … effects on these phenotypes, so negative epistasis in the majority of …

Pervasive epistasis exposes intramolecular networks in adaptive enzyme evolution

K Buda, CM Miton, N Tokuriki - Nature Communications, 2023 - nature.com
… of epistasis in enzyme evolution by analyzing 41 fitness landscapes generated from seven
enzymes. We show that >94% of all mutational and epistatic … changes in epistasis along …

The causes of epistasis

JAGM De Visser, TF Cooper… - Proceedings of the …, 2011 - royalsocietypublishing.org
… study epistasis to understand the genotype–phenotype map, … , although not ubiquitous, is
quite common and sometimes … of epistasis, we do not yet understand how evolution shapes …

The role of epistatic gene interactions in the response to selection and the evolution of evolvability

AJR Carter, J Hermisson, TF Hansen - Theoretical population biology, 2005 - Elsevier
… architecture of the genotype–phenotype map determines evolvability, but few studies have
… we use the multilinear epistatic model to study the effects of different forms of epistasis on the …

[PDF][PDF] The genotype-phenotype map structure and its role for evolvability

M Pavlicev, S Bourg, A Le Rouzic - 2022 - drive.google.com
… the notions of pleiotropy and epistasis, and argue that their effect on evolvability is not captured
… With re spect to biological traits, then, pleiotropy is ubiquitous but not universal, so each …

Global epistasis makes adaptation predictable despite sequence-level stochasticity

S Kryazhimskiy, DP Rice, ER Jerison, MM Desai - Science, 2014 - science.org
Epistatic interactions between mutations are pervasive in microbial … of epistasis (8–10), which
can drive convergent phenotypic … laboratory evolution experiment in S. cerevisiae (fig. S1). …

Rates of fitness decline and rebound suggest pervasive epistasis

L Perfeito, A Sousa, T Bataillon, I Gordo - Evolution, 2014 - academic.oup.com
… The simplest model pictures evolution as a walk in a geometric space of n phenotypic traits.
It assumes that, within a given constant environment, a single value for each of the n traits is …