Phylogenetic comparative analysis: a modeling approach for adaptive evolution

MA Butler, AA King - The american naturalist, 2004 - journals.uchicago.edu
… Next, we explain in some detail how one may model adaptive evolution by hypothesizing
the operation of different selective regimes along the various branches of the phylogeny. We …

[HTML][HTML] Comparative chloroplast genome analyses of Paraboea (Gesneriaceae): Insights into adaptive evolution and phylogenetic analysis

Y Wang, F Wen, X Hong, Z Li, Y Mi… - Frontiers in plant science, 2022 - frontiersin.org
… genus to study the phylogeny and adaptive evolution of karst plants. In this study, the complete
chloroplast genomes of twelve Paraboea species were sequenced and analyzed. Twelve …

[HTML][HTML] Chloroplast genomes of five Oedogonium species: genome structure, phylogenetic analysis and adaptive evolution

Q Xiong, Y Hu, W Lv, Q Wang, G Liu, Z Hu - BMC genomics, 2021 - Springer
… species, indicating that terrestrial Oedogoniales taxa may have undergone adaptive
evolution to adjust to the difference in light intensity between aquatic and terrestrial habitats. …

[HTML][HTML] The Chloroplast Genome of Carya illinoinensis: Genome Structure, Adaptive Evolution, and Phylogenetic Analysis

Z Mo, W Lou, Y Chen, X Jia, M Zhai, Z Guo, J Xuan - Forests, 2020 - mdpi.com
… transmission, slow evolutionary rate of change and less recombination for most angiosperms,
the cp genome is suitable for species identification, phylogenetic analysis, and exploring …

Detecting adaptive evolution in phylogenetic comparative analysis using the Ornstein–Uhlenbeck model

CE Cressler, MA Butler, AA King - Systematic biology, 2015 - academic.oup.com
… this region, the preference of AIC for the NP model is not evidence against the adaptive
hypothesis. Thus, large values of η do not pose challenges to the detection of adaptive evolution. …

[HTML][HTML] Molecular evolution of chloroplast genomes of orchid species: insights into phylogenetic relationship and adaptive evolution

WL Dong, RN Wang, NY Zhang, WB Fan… - International Journal of …, 2018 - mdpi.com
… The phylogenetic analysis based on whole cp … evolutionary relationship in the phylogenetic
tree. These results provide important insights into the adaptive evolution and phylogeny of …

[HTML][HTML] … analysis of chloroplast genomes for five Dicliptera species (Acanthaceae): molecular structure, phylogenetic relationships, and adaptive evolution

S Huang, X Ge, A Cano, BGM Salazar, Y Deng - PeerJ, 2020 - peerj.com
Phylogenetic analysis identified a close relationship between D. ruiziana and D. montana, …
genes was analyzed. This work may contribute to future adaptive evolution analysis of the …

Analysis of complete chloroplast genomes of Curcuma and the contribution to phylogeny and adaptive evolution

L Gui, S Jiang, D Xie, L Yu, Y Huang, Z Zhang, Y Liu - Gene, 2020 - Elsevier
Phylogenetic analysis of complete plastome sequences and … evolution. These results are
of great significance for us to understand the genetic basis, phylogeny and adaptive evolution

Phylogenetic origins and adaptive evolution of avian and mammalian haemoglobin genes

J Czelusniak, M Goodman, D Hewett-Emmett… - Nature, 1982 - nature.com
… same as that used in a previous cladistic analysis" of 172 globin sequences. The present
analysis provides clear evidence on the phylogenetic origins of bird and mammal embryonic …

[HTML][HTML] … Genome of Clethra fargesii Franch., an Original Sympetalous Plant from Central China: Comparative Analysis, Adaptive Evolution, and Phylogenetic …

S Ding, X Dong, J Yang, C Guo, B Cao, Y Guo, G Hu - Forests, 2021 - mdpi.com
… , less recombination, and slow evolutionary rate [13,14,15]. The stable and conserved
chloroplast genome is highly suitable for the study of phylogenetic analysis, species identification, …