The mitogenome phylogeny of Adephaga (Coleoptera)

A López-López, AP Vogler - Molecular phylogenetics and evolution, 2017 - Elsevier
… We attempted to dissect various biases of mitogenome evolution by establishing the effect of
… help with mitogenome assemblies and to Peter Foster for his comments on the phylogenetic

[HTML][HTML] New Mitogenomes of the Polypedilum Generic Complex (Diptera: Chironomidae): Characterization and Phylogenetic Implications

D Zhang, FX He, XB Li, Z Aishan, XL Lin - Insects, 2023 - mdpi.com
… To ensure accuracy, we used two methods for de novo assembly: (1) NOVOPlasty v3.8.3 (Brussel,
Belgium) [27] was implemented for mitogenome assembly with COI gene of …

[HTML][HTML] Phylogenetic implications of mitogenomic sequences and gene rearrangements of scale insects (Hemiptera, Coccoidea)

H Xu, X Liu, P Wang, H Li, S Wu - Insects, 2023 - mdpi.com
… Additionally, COI and srRNA, two molecular fragments from mitogenomes, were amplified …
adopted to identify the mitogenome assemblies. The mitogenomic sequences were identified …

[HTML][HTML] The sugarcane mitochondrial genome: assembly, phylogenetics and transcriptomics

DL Evans, TT Hlongwane, SV Joshi, DMR Pachón - PeerJ, 2019 - peerj.com
… plastic and could contain increased phylogenetic signals. We assembled a consensus reference
… These effects, along with the relatively large size of plant mitochondrial genomes, make …

[HTML][HTML] Complete mitogenomes of three carangidae (Perciformes) fishes: Genome description and phylogenetic considerations

Z Li, M Li, S Xu, L Liu, Z Chen, K Zou - International Journal of Molecular …, 2020 - mdpi.com
… The SOAPdenovo2 (BGI, Shenzhen, China) software package was used for de novo
assembly of the mitogenomes [43]. OGDRAW 1.3.1 (Max Planck Institute of Molecular Plant …

[HTML][HTML] Mitogenomics of the suborder Cottoidei (Teleostei: Perciformes): improved assemblies, mitogenome features, phylogeny, and ecological implications

SN Maduna, A Vivian-Smith, ÓDB Jónsdóttir… - Genomics, 2022 - Elsevier
… Here, we report the complete mitochondrial genome assemblies for C. lumpus and several
… Whilst the control region was difficult to assemble in the latter species due to the presence of …

[HTML][HTML] Five Mitochondrial Genomes of the Genus Eysarcoris Hahn, 1834 with Phylogenetic Implications for the Pentatominae (Hemiptera: Pentatomidae)

R Li, M Li, J Yan, M Bai, H Zhang - Insects, 2021 - mdpi.com
mitogenomes of the genus Eysarcoris were sequenced and analyzed, and the phylogenetic
… A5-miseq v20150522 and SPAdes v3.9.0 were used for mitochondrial genome assembly […

[HTML][HTML] Characterization of the Complete Mitochondrial Genome of Harpalus sinicus and Its Implications for Phylogenetic Analyses

X Yu, W Tan, H Zhang, W Jiang, H Gao, W Wang, Y Liu… - Genes, 2019 - mdpi.com
… Then the high-quality sequencing reads are assembled with “de novo assembly” model in …
to the mitogenome of a Carabidae species (GQ344500) using a CLC Genome Assembler (v11…

[HTML][HTML] The mitochondrial genome of Apion squamigerum (Coleoptera, Curculionoidea, Brentidae) and the phylogenetic implications

N Song, X Li, X Yin, X Li, S Yin, M Yang - PeerJ, 2020 - peerj.com
… In this article, we present the nearly complete mitochondrial genome (mitogenome) of the …
), assembled using data from Illumina next generation sequencing (NGS). This mitogenome

[HTML][HTML] Mitochondrial phylogenomics and mitogenome organization in the parasitoid wasp family Braconidae (Hymenoptera: Ichneumonoidea)

JM Jasso-Martínez, DLJ Quicke… - BMC ecology and …, 2022 - Springer
… We confirmed and detected phylogenetic signal in previously … and assembled a large
number of mitogenomes for … Our analyses yielded a robustly supported phylogeny that was …