Mitogenomic codon usage patterns of superfamily Certhioidea (Aves, Passeriformes): Insights into asymmetrical bias and phylogenetic implications

H Ding, D Bi, S Han, R Yi, S Zhang, Y Ye, J Gao… - Animals, 2022 - mdpi.com
… In this study, we successfully assembled and annotated six new complete mitogenome
sequences of Certhioidea using the genome skimming approach. Based on our new …

Complete mitochondrial genome of Scolytoplatypodini species (Coleoptera: Curculionidae: Scolytinae) and phylogenetic implications

G Yu, S Lai, S Liao, Y Cao, W Li, C Long, H Tarno… - Genes, 2023 - mdpi.com
… for phylogeny and taxonomy based on mitogenomes [15]. In this study, the mitogenome of
S… quality sequences, the reads were assembled into a complete mitogenome by MitoFlex [16]. …

MITGARD: an automated pipeline for mitochondrial genome assembly in eukaryotic species using RNA-seq data

PG Nachtigall, FG Grazziotin… - Briefings in …, 2021 - academic.oup.com
… To assess the impact of using references with different gene order arrangements when …
We then used all the assembled mitogenomes to reconstruct the phylogenetic relationships …

Monoplacophoran mitochondrial genomes: convergent gene arrangements and little phylogenetic signal

I Stöger, KM Kocot, AJ Poustka, NG Wilson… - BMC Evolutionary …, 2016 - Springer
… Here, we evaluate the potential of mitochondrial genome … hyalina were assembled into 1
contig totaling 15,102 bp and … , and thus are given high phylogenetic significance [51, 52]. …

Next-generation sequencing of mixed genomic DNA allows efficient assembly of rearranged mitochondrial genomes in Amolops chunganensis and Quasipaa …

S Yuan, Y Xia, Y Zheng, X Zeng - PeerJ, 2016 - peerj.com
Phylogenetic reconstruction of mitogenomic data In this study, both the phylogenetic
relationships and mitogenome organization suggest that A. wuyiensis and A. ricketti were …

The complete mitochondrial genome of Indian gaur, Bos gaurus and its phylogenetic implications

R Kamalakkannan, K Bhavana, VR Prabhu… - Scientific Reports, 2020 - nature.com
… The assembled mitochondrial genome sequences are available at GenBank under the
following Accession Nos. MT345892, MT345893, MT360652 and MT360653. The raw sequence …

… read-guided assembly of the iconic Christmas Island red crab, Gecarcoidea natalis (Pocock, 1888), mitochondrial genome and the challenges of AT-rich mitogenomes

HM Gan, SM Linton, CM Austin - Marine genomics, 2019 - Elsevier
… Given the substantial impact of AT-content on mitogenome assembly and the value of
complete mitogenomes in phylogenetic and comparative studies, we recommend that future …

First report of complete mitochondrial genome in the tribes Coomaniellini and Dicercini (Coleoptera: Buprestidae) and phylogenetic implications

X Huang, B Chen, Z Wei, A Shi - Genes, 2022 - mdpi.com
… Our whole mitogenome phylogenetic results support that the … Our results have produced
new complete mitogenomic data, … Next-generation sequencing and assembly were performed …

[PDF][PDF] First mitogenome for the subfamily Miltogramminae (Diptera: Sarcophagidae) and its phylogenetic implications

L Yan, M Zhang, Y Gao, T Pape… - European Journal of …, 2017 - researchgate.net
… 1–2), which is the first nearlycomplete mitogenomic data for the Miltogramminae and we
reconstruct the phylogeny of the Sarcophagidae based on all the mitogenomes in GenBank. …

[HTML][HTML] Comparative mitochondrial genomes of four species of Sinopodisma and phylogenetic implications (Orthoptera, Melanoplinae)

Q Zhongying, C Huihui, Y Hao, H Yuan, L Huimeng… - ZooKeys, 2020 - ncbi.nlm.nih.gov
… pieli as the reference and assembled the mitogenome of S. wulingshanensis using Mira
4.0.2 and MITObim 1.7 (Hahn et al. 2013). We used Geneious Prime (Kearse et al. 2012) …