Species sampling has a major impact on phylogenetic inference
G Lecointre, H Philippe, HL Vân Lê… - Molecular phylogenetics …, 1993 - Elsevier
… underlying data and the method used to infer phylogenies. If molecular synapomorphies
defining a … of the data set used for phylogenetic inference but also roughly reflect the richness of …
defining a … of the data set used for phylogenetic inference but also roughly reflect the richness of …
The impact of taxon sampling on phylogenetic inference: a review of two decades of controversy
… sampling in phylogenetic inference experiments. This review summarizes progress to
date in understanding the impact of taxon sampling on the accuracy of phylogenetic analysis. …
date in understanding the impact of taxon sampling on the accuracy of phylogenetic analysis. …
The prevalence and impact of model violations in phylogenetic analysis
S Naser-Khdour, BQ Minh, W Zhang… - Genome biology and …, 2019 - academic.oup.com
… to evaluate the effect violating SRH conditions on phylogenetic inference. Our results suggest
that violating SRH assumptions can have substantial impacts on phylogenetic inference. …
that violating SRH assumptions can have substantial impacts on phylogenetic inference. …
Impacts of terraces on phylogenetic inference
… , particularly in settings where inference is already … about terraces and their impacts on
phylogenetic inference. First, we clarify … Third, we highlight the impact of terrace size on bootstrap …
phylogenetic inference. First, we clarify … Third, we highlight the impact of terrace size on bootstrap …
Quantifying the impact of dependent evolution among sites in phylogenetic inference
CA Nasrallah, DH Mathews… - Systematic Biology, 2011 - academic.oup.com
… bias phylogenetic estimates. Here we quantify how robust methods of phylogenetic inference
… we evaluate the performance of traditional phylogenetic methods on these simulated data …
… we evaluate the performance of traditional phylogenetic methods on these simulated data …
[HTML][HTML] Site-specific time heterogeneity of the substitution process and its impact on phylogenetic inference
B Roure, H Philippe - BMC evolutionary biology, 2011 - Springer
… time and its possible impact on phylogenetic inference. We used … to an erroneous phylogenetic
tree, we analyzed a concatenation of … can negatively influence phylogenetic inference. …
tree, we analyzed a concatenation of … can negatively influence phylogenetic inference. …
The effects of partitioning on phylogenetic inference
… scheme choice on phylogenetic inference, we need to … of partitioning scheme choice on
phylogenetic inference by analyzing a … the impact of partitioning scheme choice on phylogenetic …
phylogenetic inference by analyzing a … the impact of partitioning scheme choice on phylogenetic …
The impact of anchored phylogenomics and taxon sampling on phylogenetic inference in narrow‐mouthed frogs (Anura, Microhylidae)
… Our approach comprises an exploration of two distinct methods for phylogenetic inference
[parsimony and maximum likelihood (ML)] and five different data matrices (varying from 48 …
[parsimony and maximum likelihood (ML)] and five different data matrices (varying from 48 …
Data exploration in phylogenetic inference: scientific, heuristic, or neither
… relevance of data exploration to phylogenetic inference has yet to be … of phylogenetic
inference? Our reason for seeking answers to these questions is that for phylogenetic inference to …
inference? Our reason for seeking answers to these questions is that for phylogenetic inference to …
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