Comparative analysis of complete Ilex (Aquifoliaceae) chloroplast genomes: insights into evolutionary dynamics and phylogenetic relationships

K Xu, C Lin, SY Lee, L Mao, K Meng - BMC genomics, 2022 - Springer
… hampered our understanding of phylogenetic relationships and evolutionary history. Here,
we compare chloroplast genomes from across Ilex and estimate phylogenetic relationships. …

Comparative evolutionary diversity and phylogenetic structure across multiple forest dynamics plots: a mega-phylogeny approach

DL Erickson, FA Jones, NG Swenson, N Pei… - Frontiers in …, 2014 - frontiersin.org
phylogenetic relationships … of evolutionary information to questions in community ecology
has been limited in large part by the lack of accurate estimates of phylogenetic relationships

Unifying the epidemiological and evolutionary dynamics of pathogens

BT Grenfell, OG Pybus, JR Gog, JLN Wood, JM Daly… - science, 2004 - science.org
… of dynamic forces that determine the diversity of epidemiological and phylogenetic patterns
… A central pillar of this model is the Evolutionary Infectivity Profile, which captures the …

Toward phylogenetic inference of evolutionary dynamics at scale

MA Moreno, E Dolson… - Artificial Life Conference …, 2023 - direct.mit.edu
phylogenetic theory necessary to apply these techniques to characterize evolutionary
dynamics is … Here, we lay the groundwork for practical applications of distributed phylogenetic

Evolutionary dynamics of duplicated genes in plants

A Lawton-Rauh - Molecular phylogenetics and evolution, 2003 - Elsevier
… occurring within and between taxa over evolutionary time (Bennetzen & Kellogg, 1997;
Wendel et al., 2002). The establishment of phylogenetic relationships among taxa and genes as …

Ecological trait evolution in amphibian phylogenetic relationships

FS Campos, R Lourenco-De-Moraes… - … Ecology & Evolution, 2019 - Taylor & Francis
… driven by phylogenetic relationships. Our findings reveal that phylogenetically related …
We estimated the phylogenetic relationships of the ecological traits by using the most recent …

Phylogenetic relationships and evolutionary trends in the cactus family

PC Guerrero, LC Majure, A Cornejo-Romero… - Journal of …, 2019 - academic.oup.com
… the phylogenetic relationships and evolutionary … of phylogenetic information derived from
molecular data, and from the use of phylogenies to elucidate biogeography and the evolution of …

BAMM tools: an R package for the analysis of evolutionary dynamics on phylogenetic trees

DL Rabosky, M Grundler, C Anderson… - … and Evolution, 2014 - Wiley Online Library
… Here, we will first analyse dynamic changes in speciation rates along the cetacean phylogeny,
and we will extract the 95% credible set of rate shift configurations. We will then analyse …

Phylogenetic relationships and character evolution analysis of Saxifragales using a supermatrix approach

DE Soltis, ME Mort, M Latvis… - American journal of …, 2013 - Wiley Online Library
… Using a supermatrix approach, we present a phylogenetic tree comprising 909 species of the
… We then use this phylogenetic hypothesis to examine character evolution for several traits: …

A complete estimate of the phylogenetic relationships in Ruminantia: a dated species-level supertree of the extant ruminants

MH Fernández, ES Vrba - Biological reviews, 2005 - cambridge.org
… estimate of the phylogenetic relationships among all 197 … nodes in the completely resolved
phylogeny). Bremer decay index has … which areas of ruminant phylogeny are still only roughly …