Comparative analysis of Plasmodium falciparum genotyping via SNP detection, microsatellite profiling, and whole-genome sequencing

M Kanai, T Yeo, V Asua, PJ Rosenthal… - Antimicrobial Agents …, 2022 - Am Soc Microbiol
microsatellite markers should be robust in genotyping strains of diverse geographical and
temporal origin. This approach can also be applied to multiplexed microsatellite genotyping of …

[HTML][HTML] Microsatellite genotyping and genome-wide single nucleotide polymorphism-based indices of Plasmodium falciparum diversity within clinical infections

L Murray, VA Mobegi, CW Duffy, SA Assefa… - Malaria journal, 2016 - Springer
… Genome-wide SNP data for each of the isolates were used to generate within-host F ws
fixation indices, for comparison to the microsatellite profiling of the same isolates. Using the …

Twelve microsatellite markers for characterization of Plasmodium falciparum from finger-prick blood samples

TJC Anderson, XINZ SU, M Bockarie, M Lagog… - Parasitology, 1999 - cambridge.org
… Electropherograms showing peak profiles for 6 microsatellite loci. Traces for PCR products
… To investigate the reproducibility of microsatellite genotyping of field samples we re-amplified …

[HTML][HTML] Microsatellite Genotyping of Plasmodium vivax Isolates from Pregnant Women in Four Malaria Endemic Countries

…, M Arévalo-Herrera, S Kochar, SK Kochar, P Jaju… - PLoS …, 2016 - journals.plos.org
… In all cases, parasites from maternal and placental blood had an identical MS profile. …
Gestational malaria associated to Plasmodium vivax and Plasmodium falciparum placental mixed-…

Genetic Profiling of Plasmodium ovale wallikeri Relapses With Microsatellite Markers and Whole-Genome Sequencing

V Joste, E Colard-Itté, É Guillochon… - The Journal of …, 2023 - academic.oup.com
… isolates) microsatellites successfully genotyped. Nonspecific … against P falciparum (marker
2.1) and against Plasmodium … 8 microsatellite markers, we genotyped for the first time P ovale …

Molecular profile of malaria drug resistance markers of Plasmodium falciparum in Suriname

SM Chenet, SA Okoth, J Kelley, N Lucchi… - Antimicrobial agents …, 2017 - Am Soc Microbiol
… emerging in Plasmodium falciparum. We genotyped the PfK13 propeller domain of P. …
Our results from neutral microsatellite data also confirmed a high parasite gene flow in the …

[HTML][HTML] Tracing the origins and signatures of selection of antifolate resistance in island populations of Plasmodium falciparum

P Salgueiro, JL Vicente, C Ferreira, V Teófilo… - BMC infectious …, 2010 - Springer
… Resistance of the malaria parasite Plasmodium falciparum to … in these islands, we genotyped
point mutations at P. … This strain has a known microsatellite profile for the loci used that …

Sensitive, Highly Multiplexed Sequencing of Microhaplotypes From the Plasmodium falciparum Heterozygome

…, J Colborn, F Saute, E Crawford, P Aide… - The Journal of …, 2022 - academic.oup.com
… understanding malaria transmission, an ideal genotyping method would seek to maximize …
Traditional genotyping methods such as typing of length polymorphisms [4], microsatellites [5, …

Microsatellite analysis of chloroquine resistance associated alleles and neutral loci reveal genetic structure of Indian Plasmodium falciparum

PK Mallick, PL Sutton, R Singh, OP Singh… - Infection, Genetics and …, 2013 - Elsevier
falciparum isolates genotyped for a particular locus and p i … microsatellite profile of pfcrt-flanking
loci associated with the resistant SVMNT and CVIET resembles the microsatellite profile

[HTML][HTML] Population Genetic Analysis of Plasmodium falciparum Parasites Using a Customized Illumina GoldenGate Genotyping Assay

…, S Borrmann, K Marsh, P Michon, I Mueller, P Siba… - PloS one, 2011 - journals.plos.org
… Examples of the genotype profiles (as theta scores) of 2 clinical samples (non-cultured)
described in this study are presented in Figure S1. In general, the clinical samples from Africa …