Designing artificial metalloenzymes by tuning of the environment beyond the primary coordination sphere

C Van Stappen, Y Deng, Y Liu, H Heidari… - Chemical …, 2022 - ACS Publications
… In this review, we highlight how the secondary coordination spheres of ArMs influence
metal … as templates for the design of ArMs by either rational design aided by computational …

Incorporation of second coordination sphere d-amino acids alters Cd(II) geometries in designed thiolate-rich proteins

L Ruckthong, A Deb, L Hemmingsen… - JBIC Journal of …, 2018 - Springer
… The coordination environment of the designed peptides was probed by the joint use of 113
… ) was used to obtain precise metrical parameters for the Cd(II) coordination environment. The …

The supramolecular organization of a peptide-based nanocarrier at high molecular detail

M Rad-Malekshahi, KM Visscher… - Journal of the …, 2015 - ACS Publications
… In the absence of precise information, nanovesicles built of amphiphilic “lipid-like” peptides
… –ion coordination. (c) Na + ions deeply intercalate between the C-terminal glutamate …

Design criteria for engineering inorganic material-specific peptides

BR Peelle, EM Krauland, KD Wittrup, AM Belcher - Langmuir, 2005 - ACS Publications
… Other amino acids with known metal coordination capabilities 26 (E, D… All three peptides
performed as predicted by our designprecise metrics for binding, studying increasingly complex …

Toward precise manipulation of DNA–protein hybrid nanoarchitectures

K Zhou, J Dong, Y Zhou, J Dong, M Wang, Q Wang - Small, 2019 - Wiley Online Library
… DNA–peptide conjugates carrying the specific binding peptide DPMFKLV were patterned …
peptide recognition in combination with the high symmetry of the DegP polymer coordinated

Engineering short peptide sequences for uranyl binding

C Lebrun, M Starck, V Gathu… - … A European Journal, 2014 - Wiley Online Library
… of peptide A confirms that the constrained cyclic-peptide … lanthanide cation coordination.24,
29 This prototype peptide is … use and the precise peptide concentration was determined by …

Metal coordination to ligand-modified peptide nucleic acid triplexes

DR Jayarathna, HD Stout, C Achim - Inorganic Chemistry, 2018 - ACS Publications
A challenging goal in nanotechnology is the precise and programmable arrangement of
specific elements in nanosystems in the three-dimensional space. The use of ligand-modified …

Design of folded peptides

J Venkatraman, SC Shankaramma… - Chemical reviews, 2001 - ACS Publications
… protein folds relies on the precise conversion of a linear polypeptide chain into a compact
3-… helix sequence, within the scope of the coordination number of the metal template. Further, …

Control of heme coordination and catalytic activity by conformational changes in peptide–amphiphile assemblies

LA Solomon, JB Kronenberg… - Journal of the American …, 2017 - ACS Publications
… of coordination, sequence, and morphology (micelles versus fibers) in a series of simple
peptide … The morphology of this peptide series is characterized using transmission electron and …

Stable peptide-assembled nanozyme mimicking dual antifungal actions

Y Yuan, L Chen, K Song, M Cheng, L Fang… - Nature …, 2024 - nature.com
… , we introduced metal salts which can coordinate with imidazole residue of His to form active
peptide-assembled nanozyme using de novo design assisted by AlphaFold2 and precise