Prediction of peptide-MHC binding using profiles

PA Reche, EL Reinherz - … : predicting immunogenicity in silico, 2007 - Springer
… those peptides presented by MHC molecules, prediction of peptides that can bind to MHC
molecules is … Peptides binding to MHC molecules must fit into a specific chemical and physical …

[HTML][HTML] Methods for prediction of peptide binding to MHC molecules: a comparative study

K Yu, N Petrovsky, C Schönbach, JLY Koh, V Brusic - Molecular medicine, 2002 - Springer
prediction method depends on the amount of available data (the number of peptides of known
binding affinity to the MHC molecule of … intended purpose of the prediction (screening of a …

Enhancement to the RANKPEP resource for the prediction of peptide binding to MHC molecules using profiles

PA Reche, JP Glutting, H Zhang, EL Reinherz - Immunogenetics, 2004 - Springer
peptide binding predictions across different MHC molecules with respect to the training set
size should be approached with caution. For MHC molecules with only a few known peptide

Prediction of MHC-peptide binding: a systematic and comprehensive overview

EM Lafuente, PA Reche - Current pharmaceutical design, 2009 - ingentaconnect.com
MHC-peptide binding. Many models and methods have been developed to predict peptide
binding to MHC molecules… QMs for predicting peptide binding to MHC molecules have also …

Immunoinformatics: predicting peptideMHC binding

M Nielsen, M Andreatta, B Peters… - Annual review of …, 2020 - annualreviews.org
… state-of-the-art methods, that have allowed for accurate predictions of peptide binding of all
MHC molecules, even including those that have not yet been characterized experimentally. …

Prediction of MHC class I binding peptides using profile motifs

PA Reche, JP Glutting, EL Reinherz - Human immunology, 2002 - Elsevier
… Therefore, prediction of peptides that can bind to MHC molecules is important for … for MHC
class I [6]. In this article, we will focus on prediction of peptide binding to MHCI molecules. …

Structural prediction of peptides binding to MHC class I molecules

HH Bui, AJ Schiewe, H von Grafenstein… - Proteins: Structure …, 2006 - Wiley Online Library
… of peptide binding affinity with structural features of 266 PePSSI-predicted peptide structures,
… when bound to a class I MHC molecule, and here we have examined peptide binding to …

[HTML][HTML] A community resource benchmarking predictions of peptide binding to MHC-I molecules

B Peters, HH Bui, S Frankild, M Nielsen… - PLoS computational …, 2006 - journals.plos.org
… of external predictions in all cases. For example, some methods such as syfpeithi do not
aim to specifically predict peptide binding to MHC molecules, but rather naturally processed …

A review on the methods of peptide-MHC binding prediction

Y Liu, X Ouyang, ZX Xiao, L Zhang… - Current …, 2020 - ingentaconnect.com
MHC molecules. The binding of the peptide to MHC is the most selective step, so predicting
the binding affinity of the peptide to MHC is the principal step in predicting T cell epitopes. …

Predicting peptides that bind to MHC molecules using supervised learning of hidden Markov models

H Mamitsuka - Proteins: Structure, Function, and Bioinformatics, 1998 - Wiley Online Library
… Second, we generate peptides that have high probabilities to bind to a certain MHC
molecule, based on our proposed method using peptides binding to MHC molecules as a set of …