Determination of tag density required for digital transcriptome analysis: application to an androgen-sensitive prostate cancer model
H Li, MT Lovci, YS Kwon… - Proceedings of the …, 2008 - National Acad Sciences
… To determine hormone-regulated genes in this widely used prostate cancer cellular model,
we enumerated the number of tags mapped to exons in individual transcripts before and after …
we enumerated the number of tags mapped to exons in individual transcripts before and after …
Dynamic prostate cancer transcriptome analysis delineates the trajectory to disease progression
M Bolis, D Bossi, A Vallerga, V Ceserani… - Nature …, 2021 - nature.com
… derived xenograft (PDX) models at the single-cell level. Finally, we show how our Prostate
Cancer Transcriptome Atlas can infer or validate new therapeutic avenues for cancer patients. …
Cancer Transcriptome Atlas can infer or validate new therapeutic avenues for cancer patients. …
Global transcriptome analysis of formalin-fixed prostate cancer specimens identifies biomarkers of disease recurrence
… scores for subjects based on each prediction model, divided subjects into high (poor score)
… patients with prostate cancer (17). To compare performance of different prediction models, …
… patients with prostate cancer (17). To compare performance of different prediction models, …
Transcriptome-wide prediction of prostate cancer gene expression from histopathology images using co-expression-based convolutional neural networks
… analysis of the potential of computer vision models for whole-transcriptome analysis in prostate
cancer has … We therefore conducted a transcriptome-wide analysis of gene expression …
cancer has … We therefore conducted a transcriptome-wide analysis of gene expression …
Integrated clinical, whole-genome, and transcriptome analysis of multisampled lethal metastatic prostate cancer
… analysis of whole-genome sequence, detailed clinical history, and transcriptome sequence
of multiple prostate cancer … progression model. Of the 87 mutations that disagreed with the …
of multiple prostate cancer … progression model. Of the 87 mutations that disagreed with the …
… of a candidate prognostic gene signature by transcriptome analysis of matched pre-and post-treatment prostatic biopsies from patients with advanced prostate cancer
P Rajan, J Stockley, IM Sudbery, JT Fleming, A Hedley… - BMC cancer, 2014 - Springer
… time” in vivo RNA-Seq-based transcriptome analysis of clinical … We identify a
chemotherapy-driven PCa transcriptome profile … been identified in high-risk prostate cancer …
chemotherapy-driven PCa transcriptome profile … been identified in high-risk prostate cancer …
Transcriptomics signature from next-generation sequencing data reveals new transcriptomic biomarkers related to prostate cancer
A Alkhateeb, I Rezaeian, S Singireddy… - Cancer …, 2019 - journals.sagepub.com
… (NGS) has revolutionized genomic and transcriptomic analysis. … differential expressed
transcripts in prostate cancer using RNA-Seq data. This model identifies transcripts associated …
transcripts in prostate cancer using RNA-Seq data. This model identifies transcripts associated …
[HTML][HTML] Analysing the tumor transcriptome of prostate cancer to predict efficacy of Lu-PSMA therapy
A Handke, C Kesch, WP Fendler, T Telli… - … of Cancer, 2023 - ncbi.nlm.nih.gov
… The histopathological specimen of the primary prostate tumor was available with sufficient
… analysis in n=23 patients. In this subset of patients, tumor RNA transcriptomic analyses …
… analysis in n=23 patients. In this subset of patients, tumor RNA transcriptomic analyses …
Reference-free transcriptome exploration reveals novel RNAs for prostate cancer diagnosis
M Pinskaya, Z Saci, M Gallopin, M Gabriel… - Life science …, 2019 - life-science-alliance.org
… Predictive modeling yielded a restricted probe panel … RNA samples of prostate tissues (8
normal and 16 tumor specimens, Table … TCGA prostate cancer poly(A)–selected RNA-seq and …
normal and 16 tumor specimens, Table … TCGA prostate cancer poly(A)–selected RNA-seq and …
[HTML][HTML] Prediction of Clinically Significant Prostate Cancer by a Specific Collagen-related Transcriptome, Proteome, and Urinome Signature
… models of clinically significant prostate cancer (csPCa). (A) Development of the collagen
support vector machine (SVM) model … Using transcriptome analysis of collagen-high PCa, we …
support vector machine (SVM) model … Using transcriptome analysis of collagen-high PCa, we …
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