… dynamics of complex systems. Here, we review the results of the topological analysis of protein
structures as molecular networks … role of hubs and central network elements in governing …

… the field of protein dynamics. Indeed, we can now study protein dynamics in atomistic details
… and comprehensive view on protein structure and dynamics. What is needed now is a better …

… Here, we review fundamental advances in protein dynamics, network theory and coevolutionary
analysis that have … These network analysis techniques determine local and global …

… sites and protein folding and function, to name a few (5–8). Similar to protein contact network
analysis, … space and can help in structure-function analysis. Most of these approaches use …

… protein dynamics, normal mode analysis (NMA)10 is very attractive because it allows to
analytically compute the complete statistical mechanics of a protein … dynamics of proteins by …

… WT and E22G trajectories and network analysis of the Markov … dynamics that are not
apparent on casual inspection. Additional technical details regarding our simulations and analysis …

… However, we know that protein interaction networks (PINs) are not static but dynamic.
They change over seconds as cellular processes require protein complexes to assemble and …

… protein dynamics … proteins (7–9), molecular dynamics (MD) simulations that extend into the
microsecond range are providing the information required for a more quantitative analysis (10…

… analysis of the distribution and mutual distances of these 112 vectors revealed that 1) the
universe of protein dynamics is covered by our subset of 112 proteins … network analysis [68]. …

… In order to explore what proportion of protein‐centric dynamics are most consistent with …
dynamic networks in silico by randomly selecting interactions from our entire BC‐PCA network (…