Protein interaction networks

M Pellegrini, D Haynor, JM Johnson - Expert review of proteomics, 2004 - Taylor & Francis
… Despite our limited ability to reconstruct a genome-wide protein interaction network for
human cells, our attempts to identify smaller interaction modules within the network have proven …

Analyzing proteinprotein interaction networks

GCKW Koh, P Porras, B Aranda… - Journal of proteome …, 2012 - ACS Publications
… In order to draw our protein interaction network, we need to import the XGMML file we
obtained from IntAct into Cytoscape. Go to “File” → “Import” → “Network (Multiple File Types)”. A …

Construction and analysis of proteinprotein interaction networks

K Raman - Automated experimentation, 2010 - Springer
… between proteins. I then give a brief overview of some of the databases and tools that are
useful for a study of proteinprotein interactions. I also present an introduction to network theory…

Modeling of protein interaction networks

A Vázquez, A Flammini, A Maritan, A Vespignani - Complexus, 2003 - karger.com
… eventually to the drawing of protein interaction networks (PINs). This has … protein interaction
data have been used to generate a weblike view of the protein-protein interaction network [1]…

Global protein function prediction from protein-protein interaction networks

A Vazquez, A Flammini, A Maritan… - Nature biotechnology, 2003 - nature.com
… analyze the yeast Saccharomyces cerevisiae protein-protein interaction network 5 . The
robustness of … proteins and also in cases of deletion and insertion of specific protein interactions. …

[图书][B] Protein interaction networks: computational analysis

A Zhang - 2009 - books.google.com
interaction data and facilitated the construction of integrated proteinprotein interaction
networks. The resulting large volume of proteinprotein interaction data has posed a challenge …

Proteinprotein interaction networks: the puzzling riches

SJ Wodak, J Vlasblom, AL Turinsky, S Pu - Current opinion in structural …, 2013 - Elsevier
interactions detected by different methods. Lastly, we present a brief overview of the
literature-curated protein interaction … independent validation of newly derived interaction networks. …

Proteinprotein interaction networks and subnetworks in the biology of disease

RK Nibbe, SA Chowdhury, M Koyutürk… - … Systems Biology and …, 2011 - Wiley Online Library
proteins will explain a wider range of variability inherent in these phenotypes. These models,
which encompass protein interaction networks … by integrating protein interaction data with …

Characterization and modeling of proteinprotein interaction networks

V Colizza, A Flammini, A Maritan… - Physica A: Statistical …, 2005 - Elsevier
… and discuss possible biases in interaction networks obtained with different techniques. We
… cast the protein interaction networks in the family of dynamically growing complex networks. …

Protein-protein interaction networks: from interactions to networks

SY Cho, SG Park, DH Lee, BC Park - BMB Reports, 2004 - koreascience.kr
… methods for detecting protein interactions such as yeast two-… to decipher protein functions in
complicated biological networks. In … protein interactions and the future direction of interaction