Endoplasmic reticulum and the unfolded protein response: dynamics and metabolic integration
… response to cellular stress, a well-established signaling cascade, the unfolded protein response
… Here, we review the distinct functions of the ER and UPR from a metabolic point of view, …
… Here, we review the distinct functions of the ER and UPR from a metabolic point of view, …
Signal integration in the endoplasmic reticulum unfolded protein response
… — cumulatively called the unfolded protein response (UPR). Together, at least … metabolism
of proteins, amino acids and lipids. The arms of the UPR are integrated to provide a response …
of proteins, amino acids and lipids. The arms of the UPR are integrated to provide a response …
[HTML][HTML] An integrated stress response regulates amino acid metabolism and resistance to oxidative stress
HP Harding, Y Zhang, H Zeng, I Novoa, PD Lu… - Molecular cell, 2003 - cell.com
… integrated stress response initiated by eIF2α phosphorylation that insures supply of amino
acids for protein … Activation of this integrated stress response is shown to have a special role …
acids for protein … Activation of this integrated stress response is shown to have a special role …
Integrated genomic and proteomic analyses of a systematically perturbed metabolic network
… the genes, gene products, and metabolic substrates required for function of this process and
… protein responses, describe an ongoing attempt to systematically explain these responses …
… protein responses, describe an ongoing attempt to systematically explain these responses …
Metabolic fuel selection: general integration at the whole-body level
PJ Randle - Proceedings of the Nutrition Society, 1995 - cambridge.org
… Aspects of the partioning of tissue glucose metabolism are shown in Fig. 1; for reviews,
see … Glucose and free fatty acid metabolism in non-insulin-dependent diabetes mellitus - …
see … Glucose and free fatty acid metabolism in non-insulin-dependent diabetes mellitus - …
Optimal regulatory strategies for metabolic pathways in Escherichia coli depending on protein costs
… controls metabolism has not yet been fully explored. In this work, we address this problem
by integrating a large number of experimental data sets with a model of the metabolism of …
by integrating a large number of experimental data sets with a model of the metabolism of …
[HTML][HTML] Dynamic analysis of integrated signaling, metabolic, and regulatory networks
… developed a prototypic integrated system comprising signaling, metabolic, and regulatory …
efficiently scaled to integrated intracellular systems that incorporate signaling, metabolic, and …
efficiently scaled to integrated intracellular systems that incorporate signaling, metabolic, and …
[HTML][HTML] Bringing metabolic networks to life: integration of kinetic, metabolic, and proteomic data
W Liebermeister, E Klipp - Theoretical Biology and Medical Modelling, 2006 - Springer
… The structure of the metabolic system (ie, stoichiometries and … is obtained by integrating
metabolic fluxes, concentrations, … synthesis pathway: the integration of metabolic data has little …
metabolic fluxes, concentrations, … synthesis pathway: the integration of metabolic data has little …
[HTML][HTML] Distinct mitochondrial defects trigger the integrated stress response depending on the metabolic state of the cell
Mitochondrial dysfunction is associated with activation of the integrated stress response (ISR)
but the underlying triggers remain unclear. We systematically combined acute …
but the underlying triggers remain unclear. We systematically combined acute …
Functional integration of a metabolic network model and expression data without arbitrary thresholding
PA Jensen, JA Papin - Bioinformatics, 2011 - academic.oup.com
… Our MADE algorithm integrates gene or protein expression data and a metabolic model
without a priori determination of activity thresholds. MADE can be applied to any set of two or …
without a priori determination of activity thresholds. MADE can be applied to any set of two or …
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